| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Csal_1059 |
|---|
| Symbol | |
|---|
| ID | 4027848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chromohalobacter salexigens DSM 3043 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007963 |
|---|
| Strand | + |
|---|
| Start bp | 1196871 |
|---|
| End bp | 1198583 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637966237 |
|---|
| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
|---|
| Protein accession | YP_573115 |
|---|
| Protein GI | 92113187 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGAGA AAGCGTGGTT CAAGCAGGTC ATGCAGGATT CGGAAGACGC ATACCTTTTC
ATCTCGAAAG ACAGCATGAT CGAAGATGTG GCAGGGGCTA TCCAGAATGT CTTGAAGGTG
CCAAGAAAAG AGCTTGTTGG TGCCGCGTTA TCCGATCGGG ATATTTTGCG AGCGGATTTC
CTGAAAAGTT TCATCGCAGA GTCCGTCAAA GCGCCGTGCT CCAGCGACAA GAAAAACGAT
GCCTATCTGG ATCGGCGGAA CCAGTTGCGC TGGAAATACT ATGAAGCCAG AGATGGCAAT
GTCGTAGCCA AAGTCTCTCG CATGAATACC CACTTGGAGG CTGAAGAAGC GATCGTCGAT
CAGCTCGCGG ATGCGCTGCC GATGATGATT ACTTATGTCG ACAGGAATTG GTGCTTTCTT
TTCAACAATA AAGCCTATGA AGAATTCATC GGGCTGACCC GTGAGGAGTT GTACCGAAAG
CCTGTCTCCT CGGTCATGAC CGAGGAGTCA TTCAAGAAGA TCGTGCCGCG TTTTGAGAGA
GCTCTGAGTG GAGAGCGAGT CAACTATGAA GATAGGTTGA CTCTTGCCGA TGGCCGGTCT
CTTCACTTCA ACGTCAGCTA TATTCCTTAT TTTATTGGTG ATGAAGTCGG TGGTTTCTAT
GCCGTCATCA ATGATGTCTC GGAATACAGC GCGATGATCA ATCTTCTAAA GGGCATTCAT
AACGCTGTCA ACCGAACGGA TATTGATACA CAAGAGATTA TCAGCAATCT GCTGCGTGAT
GCACTGGATT ATCTGGGGCA GGATATCGCG ATCGTCAGCC AGGTGGTGGG GGATCAGTAC
ACCATCATGT GGAGCGAATC CAAGGAAGCA GCGATTGAGC CGGGTACGGT ATTTTCCCTT
GGAGATACAT ACTGCCGTCT GACGCTGAAC CATGATGATG TGTTTCACAC CATCGATGCA
GGCAATGATA TACGCTTTTC AGGCCATCCT TGCTATGAAA CGTTTGGCTT GGAAACCTAC
ATCGGAGCCC CCGTGCGCAT AAATGGCATT GTCTGGGGGA CCGTCAACTT CTCCAGCGCT
TCGCATCGCG TGAAACCCTT CAGTGATATC GAAGTGGAGC TCGTGCGCTT GATCGTGGGG
GCAGTCGAGA AGGTAGTAAC GCAATTCGAG TATTTATCGC AGGTCAAAAA AGAGCGCGAT
GAAATGGCGG CGCTGGCAAG AAAGGACCAG TTGACGGGGT TACCTAATCG AGCATACCTC
AACGAGTATG TCGACATGCT CGTCAAGAGT CCAGACGTTC AACACGCCGG TATTTGTCTT
GCCGTCATCG ACATCGATCA TTTCAAAACC ATCAACGACA CCTATGGCCA TGATATTGGC
GACCAAGTGA TCATCTGGCT CTCGGAGCGC GTCACGGAAG TTCTTCGCGC TCGAGCGGGT
GACTTCGCGG CACGCGTGGG CGGTGAGGAA TTCGTCGTCA TGATCAATAA CTCGTCACTG
GAGGTGGCTC GCAGCGTGAT GGAACGCGTG AGATCGAAGA TCGAGTCGAC GCCGATTCCC
ATCGAGGAAG CGTCCCCGCT TCACATCACG ATCAGCAGTG GCGTCACTCA GTGGCAGCCC
ACCGACACAT ATCCACATGT GTTCAAACGT GCCGACGAAG CGCTGTACGA GGCGAAGCAC
GGTGGGCGCA ATCAGGTTTG TGTGAGCCAG TAG
|
|---|
| Protein sequence | MPEKAWFKQV MQDSEDAYLF ISKDSMIEDV AGAIQNVLKV PRKELVGAAL SDRDILRADF
LKSFIAESVK APCSSDKKND AYLDRRNQLR WKYYEARDGN VVAKVSRMNT HLEAEEAIVD
QLADALPMMI TYVDRNWCFL FNNKAYEEFI GLTREELYRK PVSSVMTEES FKKIVPRFER
ALSGERVNYE DRLTLADGRS LHFNVSYIPY FIGDEVGGFY AVINDVSEYS AMINLLKGIH
NAVNRTDIDT QEIISNLLRD ALDYLGQDIA IVSQVVGDQY TIMWSESKEA AIEPGTVFSL
GDTYCRLTLN HDDVFHTIDA GNDIRFSGHP CYETFGLETY IGAPVRINGI VWGTVNFSSA
SHRVKPFSDI EVELVRLIVG AVEKVVTQFE YLSQVKKERD EMAALARKDQ LTGLPNRAYL
NEYVDMLVKS PDVQHAGICL AVIDIDHFKT INDTYGHDIG DQVIIWLSER VTEVLRARAG
DFAARVGGEE FVVMINNSSL EVARSVMERV RSKIESTPIP IEEASPLHIT ISSGVTQWQP
TDTYPHVFKR ADEALYEAKH GGRNQVCVSQ
|
|---|
| |