| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4565 |
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| Symbol | |
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| ID | 4025333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007961 |
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| Strand | - |
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| Start bp | 20666 |
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| End bp | 21463 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637965064 |
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| Product | conjugal transfer protein TrbJ |
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| Protein accession | YP_571972 |
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| Protein GI | 92109686 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5314] Conjugal transfer/entry exclusion protein |
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| TIGRFAM ID | [TIGR02780] P-type conjugative transfer protein TrbJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.30666 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAGAC GCTTCTCGCC GATTCATAGG GCGCTCATTG TCGCCTTCAT CATCGGATTG
CCGACGTCAG GTCCGGCCTT CGCCGGCGCT GCGGCCGGCG GCGCCACCGA GTTCACGCAG
ATTCTCAACA ACGGCGAGTT GGTCAGCCTC GTCGGGCAGT CGACGACGCA GATCAACAAC
CAGATTCAGC AGATCTCGCA GCTTGCCCAG CAGATTCAGA ACCAGCTGAA GATCTACCAG
AACATGCTGC AGAACACCGC GCAGTTGCCC TCGCATGTCT GGGGCCAGGC CGAGGGTGAT
CTCAAACAGC TGCAAAGCGT CGTCAACCAG GGGCAGGGCA TCGCGTTTTC GATGGGCAAT
ATCGACGACG TGCTCAAGCA GCGCTTCCAA AGCTACGCGC AGTTCAAGAC CAGCCTGCCG
AACGGCGCGA ACTTCGCGTC GACCTATCAG ACCTGGTCGT CCACGAACCG CGACACGATC
GCCGGCACGC TCCAGGCCGC GGGTCTCACC TCGCAGCAAT TTTCGACCGA GAACGCCACG
ATGGCGCAAC TCAAGACCGC CTCGGAGAGC GCCGACGGCC AGATGAAGGC CCTGCAGGTT
GGCCATGAGA TCGCCGCCCA GGAAGTCGCG CAGATGCAGA AGTTGCGGGG ACTGATCGCG
CAGCAGACCA CGATGATGGC GACCTGGTTC CAGTCCTCGC AGGCAGGCAA GGACCTGTCG
CAGGCGCGCC GCGAGCAGTT CTTCAACGCG ACCGCACCGG TGACCTCCGG CGGCCAGACC
ATGGAACCGC GCTGGTGA
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| Protein sequence | MPRRFSPIHR ALIVAFIIGL PTSGPAFAGA AAGGATEFTQ ILNNGELVSL VGQSTTQINN
QIQQISQLAQ QIQNQLKIYQ NMLQNTAQLP SHVWGQAEGD LKQLQSVVNQ GQGIAFSMGN
IDDVLKQRFQ SYAQFKTSLP NGANFASTYQ TWSSTNRDTI AGTLQAAGLT SQQFSTENAT
MAQLKTASES ADGQMKALQV GHEIAAQEVA QMQKLRGLIA QQTTMMATWF QSSQAGKDLS
QARREQFFNA TAPVTSGGQT MEPRW
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