| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4540 |
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| Symbol | |
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| ID | 4025308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrobacter hamburgensis X14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007961 |
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| Strand | + |
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| Start bp | 122 |
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| End bp | 3445 |
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| Gene Length | 3324 bp |
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| Protein Length | 1107 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637965042 |
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| Product | Dtr system oriT relaxase |
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| Protein accession | YP_571950 |
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| Protein GI | 92109664 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCATCA CCCACTTCAC CGTCCAGATC GTCAGCCGCG GCACCGGCGG CAGCGCGGTG
CTGTCGGCGG CCTACCGGCA TTGCGCGCGG ATGGACTACG AGGCCGAGGC GCGCGTCGTC
GACTATTCCA ACAAGCGCAA CCTGGCGCAT GAGGATTTTG TGCTGCCGCC GGACGCGCCG
GCCTGGGTTC GCGCCATGAT CGCCGACCGA TCGGTGTCGG GCGCATCTGA GACCTTCTGG
AACTATGTCG AGGCCTTCGA GACACGCTCC GATGCGCAGT TCGCCCGCGA GGCGATCATC
GCGCTGCCGG TGGAGCTCAC GCGCGAGCAG AACATCGCGC TGATGCGCGC CTTCGTGACG
CAGGAGATTC TCCCGCGCGG GCAGGTCGCG GACTGGGTCT ATCACAATGA GCCCGGCAAT
CCTCACGTCC ACCTGATGAC GACGCTGCGT CCGCTGATCG AGAGCGGCTT CGGTGGAAAG
AAGGTCGCTG TCACGGGCGA AGACGGCAAG CCGCTGCGCA CCCAGGCGGG CAAGATTCGC
TACGCGCTCT GGGCTGGCGA TACGCCGGAC TTCCTGGCGC AGCGAGCGCG ATGGATCGAT
CTGCAGAACC AGCACCTCGC GCTCGCCGGT CTCGACGTCC GCGTCGAGGG CCGCTCCTAC
GCCGAGCGTG GCATCGCCAT CGTGCCGACC ACCCATATCG GCGTCGCGAC CAAGGCCATC
GACCGTCGCA AGGCGAAGCG GCAGGGCGGC ACGCAACGGC TCGATCGTCT CGCGGTCTTC
GAAGAAAACC GCGCCGAGAA CGCCCGCCGT ATTCAGCGCC GACCCGAAAT CGTGCTCGAA
CTCGTCAGCC GCGAGAAAAG CGTCTTCGAC GAACGCGACA TCGCCAAGGT GCTGCATCGC
TATGTCGACG ATTCCGGCAC CTTCCAGAAT CTCCTGACCC GCATCCTGCA ATTGCCGGAG
GTAATCCGGC TGCAAGCCGA GAGCATCGAC TTCGCCACGG GCGGACGAGC GCCGGCGCGC
TACACGGTGC GCGAGCTGAT CCGGTGTGAG GCTGAGATGG CGCGTCGCGC GATCCATCTC
TCGGGGAGCA CGACCTTTCC GGTCAAAGCG TCCGTCATTG CGGGCGTGTC CGCGCGTCAC
GCCAACCTCT CCGCCGAGCA ACGCACGGCC ATCGAGCATC TGTCGTCCGG AGAAAGGATC
GCGGCGGTCG TCGGCCGCGC CGGCGCCGGC AAAACCACGA TGATGCGGGC GGCCCGAGAA
ATGTGGGAAG AGGCCGGATA CCGCGTTGTC GGCGGGGCAC TGGCGGGCAA GGCGGCCGAG
GGGTTGGAGA AGGAAGCAGG CATCGCCGCC CGCACGCTCG CCTCCTGGGA ATTGGGCTGG
AAGAACGGCC GCGATGATCT CGACGACAAG ACCGTGTTCG TCCTGGACGA GGCCGGCATG
GTGGCCTCTC GGCAGATGGC GCTGGTTGTC GAAACCGCGT CGAAAGCGGG CGCGAAGATC
GTCCTGGTCG GCGATCCCGA GCAGCTCCAG CCGATCGAGG CCGGGGCGGC GTTTCGCTCC
ATCGTCGAGC GCATCGGCTA TGCCGAACTC GAGACGATCT ATCGCCAGCG CGAACAATGG
ATGCGTGACG CCTCGCTCGA TCTCGCGCGC GGCCGCACGG CGCAGGCGCT TTCCGCCTAT
CGCCAGCATG GACGTGTGCT CGGCTCCGAA TTGAAGGCGC AGGCGATCGA CAGTCTGATC
GCCGACTGGA ACCGCGATTA CGATCCGTCG AAGTCGACCT TGATCCTCGC ACATCTGCGC
CGCGACGTCC GCGCGCTCAA CGATATGGCG CGGGCCAAAC TCGTCGAACG CGGTCTCGTC
GAAGAGGGAC ACGTCTTCGG AACGGAAGAC GGCGAGCGGC GCTTTGCCGT CGGCGACCAG
ATCGTCTTCT TGAAGAATGA AGGATCGCTC GGCGTGAAGA ACGGCATGAT CGGCAAGGTC
GTTGACGCCG CGCCTGGCCG CCTGGTCGCG GAGATCGGCG ACGGCCAAGG CAGCGTCGAG
AACCGCCGCC GTGTTGCGGT CGAGCAGCGC TTCTACCGCA ATGTCGACCA TGGCTATGCG
ACGACCGTTC ATAAGGCGCA GGGTGCGACC GTCGACCGGG TCAAGGTGCT GGCGACGCTC
TCGCTCGACA AGCACCTCAC TTACGTGGCG CTGACCCGCC ATCGCGAGGA GGTGACGCTC
TATTACGGCC GGCGCTCGTT CCAGTTCGCG GGTGGCCTGA TCCCAATCCT GTCGCAGCGC
CGCGCGAAGG AAACCACGCT CGACTACGAG CGCGGCGCCC TTTATCGCGA TGCGCTGCGC
TTCGCCGCCA ACCGCGGTCT GCACATCGTC AGGGTGGCGC GGACGCTCAT CAACGACCGC
CGGCGCTGGA CGCTTCGCCA GAAGCAGCGG TTGGTGGATG CGGGCCGCCG GTTGCGCGCG
CTCGGCGAGA GGCTCGGCCT GGTCGATAGC CACAAACCCG TCATCAGCAC CGCGCGGAAG
GAGGCGAAGC CCATGGTCGC CGGCGTCACG ACATTTCTCA AATCGTTCAC CGACACGATC
GAGGACAGGA TCCTCGCCGA CCCTGCCATT AAGAAGCAAT GGAAGGAGGT GTCGACACGC
TTCCGCCTCG TCTTCGCCGA TCCCGAGCGC GCCTTCCGGG CGGTGAACTT CGACGCCATG
TTGAAGGACT CCGCCGCCGC GGTGTCGACG ATCCAGCAGC TCGCCGCGAA CCCGGAATCC
TTCGGGGCTT TGCGTGGTAA GACCGGCCTG CTGGCGGGCA AGGCCGACAA GCAGGAGCGG
CAGCGTGCCG AGGCCAATGT GCCGGCGCTG AAGAGCGACA TCGAGCGCTA TCTGCGGCTT
CGCGCCGAGG CGGAGCACAA GCATGAAGCC GAGGAGCGTG CGATCCGGCA CAGCGTCGCC
ATCGACATCC CGGCTTTGTC GCGTGATGCG CATCGCGTGC TCGAACGCGT GCGCGACGCG
ATCGACCGCA ACGACCTGCC GAGCGCGCTC GAGTTCGCGC TCGCCGACAG GATGGTGAAA
GCCGAGATCG ACGGCTTCAA CAAGGCGATC GCCGAGCGCT TCGGCGATCG CACCTTCCTG
CCGAATGCGG CCAGGGAGGC GAAGGGTCAG GCCTTCGAGA AGGCGGCCGC CGGCATGGAC
CCGGCGCGCC GCGAGCAGCT GAAGGAAGCC TGGCCTGCGA TGCGCACAGC ACAGCGGCTC
GCGGCAGGGG AGCGCACGGC GCAGGCGCTG AAGCAGGTGG AGTCGCAACG CATGATGCAG
CGGCAGGGAC AGACCTTGAA ATGA
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| Protein sequence | MAITHFTVQI VSRGTGGSAV LSAAYRHCAR MDYEAEARVV DYSNKRNLAH EDFVLPPDAP
AWVRAMIADR SVSGASETFW NYVEAFETRS DAQFAREAII ALPVELTREQ NIALMRAFVT
QEILPRGQVA DWVYHNEPGN PHVHLMTTLR PLIESGFGGK KVAVTGEDGK PLRTQAGKIR
YALWAGDTPD FLAQRARWID LQNQHLALAG LDVRVEGRSY AERGIAIVPT THIGVATKAI
DRRKAKRQGG TQRLDRLAVF EENRAENARR IQRRPEIVLE LVSREKSVFD ERDIAKVLHR
YVDDSGTFQN LLTRILQLPE VIRLQAESID FATGGRAPAR YTVRELIRCE AEMARRAIHL
SGSTTFPVKA SVIAGVSARH ANLSAEQRTA IEHLSSGERI AAVVGRAGAG KTTMMRAARE
MWEEAGYRVV GGALAGKAAE GLEKEAGIAA RTLASWELGW KNGRDDLDDK TVFVLDEAGM
VASRQMALVV ETASKAGAKI VLVGDPEQLQ PIEAGAAFRS IVERIGYAEL ETIYRQREQW
MRDASLDLAR GRTAQALSAY RQHGRVLGSE LKAQAIDSLI ADWNRDYDPS KSTLILAHLR
RDVRALNDMA RAKLVERGLV EEGHVFGTED GERRFAVGDQ IVFLKNEGSL GVKNGMIGKV
VDAAPGRLVA EIGDGQGSVE NRRRVAVEQR FYRNVDHGYA TTVHKAQGAT VDRVKVLATL
SLDKHLTYVA LTRHREEVTL YYGRRSFQFA GGLIPILSQR RAKETTLDYE RGALYRDALR
FAANRGLHIV RVARTLINDR RRWTLRQKQR LVDAGRRLRA LGERLGLVDS HKPVISTARK
EAKPMVAGVT TFLKSFTDTI EDRILADPAI KKQWKEVSTR FRLVFADPER AFRAVNFDAM
LKDSAAAVST IQQLAANPES FGALRGKTGL LAGKADKQER QRAEANVPAL KSDIERYLRL
RAEAEHKHEA EERAIRHSVA IDIPALSRDA HRVLERVRDA IDRNDLPSAL EFALADRMVK
AEIDGFNKAI AERFGDRTFL PNAAREAKGQ AFEKAAAGMD PARREQLKEA WPAMRTAQRL
AAGERTAQAL KQVESQRMMQ RQGQTLK
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