| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4464 |
|---|
| Symbol | |
|---|
| ID | 4025475 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007960 |
|---|
| Strand | + |
|---|
| Start bp | 108692 |
|---|
| End bp | 112255 |
|---|
| Gene Length | 3564 bp |
|---|
| Protein Length | 1187 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637964971 |
|---|
| Product | DEAD/DEAH box helicase-like |
|---|
| Protein accession | YP_571879 |
|---|
| Protein GI | 92109592 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1204] Superfamily II helicase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAACG CAGCTACTAT CGCCATCGCC CGCGAAATTC GAGAGAACTT GGCAGGCCAA
GCCCTAACGG CGCGCCAAGC CAAACTCTAC AGCCAACGGT TACGCCGCGA CATGGGCCGT
GATGATTTAG CGAGTTTCGG AGCGGGAGAC ATCGCCGGTT ATCTCGAAGA AGCGATGTTG
CTACTGGAAA GCGGCTGGTT TGAGCGAAGC GCGGACATTA CCTCGCCTTG GCGCACCTCG
ATCAAGCGTG CGGCAGAGAT CATCGAATGG CTTTCGCAAT CCCGGCTAAA GCCGCCGGGC
GCTCCGCTAC ATCTGTTGGC TGCCGCAGCC TATCAATTGG CCGATTATCC GGCGATGGCG
CTGGGACATT TACGGCGACT ACCGGAGGGG GAGCCGCTCT CAGAGCTGCT CCGCCAGTTC
GTTCGCGCAG ATTTCCCGGG CGCGTTCCAG GCGGCGCAGA CGTTCTGGAA CAATTATCGT
GGGTTGCGGG CCGAAGGCCG CATCGATCCT AATGACCTCG AAGTCGCGGC AGTCCAACAT
ACAGTCATGT GTGTCGGGAC GATCTGCGCG TTTCTTAGAA CGGGCGGGGA TGTCCCCGTC
GAGCGCGCGG TGATCAAGCT GGAAGCGCTC GCCCTAGGAT TCCTGCATAG TCGCGATTCC
TATTCCTACC TGCTGGCGCG GTTGACGGCG GCTAGCGCAA GGCGGTTTAT CGAAACCTGC
CTTTGGCCGC AGATCGATCG GCTCCGCCTT ACGTCCAGCG GCCCGGCCGG CAATGCTCTA
ATCCAGTTTG CGCGCTCGGC CTTTGCCAAC AAGCGAGCAC TCGTCTGGCC TGCGCAGGCG
GCTGGCATCG CGAAGCTGCG CGACAACAGT TCGTTTGTAC TGTGTACGCC AACCGGCTCA
GGGAAAACCA CGGTCGCCAC CCTTGGCGCG GTACAAGGCC TGTTCGCCGA TCCCCCGGTC
GGAGGCGCTG CTGGAAATCT CGTACTTTAC CTCGTTCCAT CCCGCGCGCT CGCGGCGGAG
GTGGAGAGCC GCCTCGCCGA GGATCTTCGT GGGATTGCAG CGGAGCCGGT TGTGGTTACG
GGCCTGTATG GAGGTGTCGA TTGGGGGCCG ACCGACGCCT GGATCCAAAC CGATCAGCCG
ACCGTGGTCA TATGCACGTT TGAGAAAGCC GATGCGCTCC TGCGCTATTT GGGCGTTCTG
TTCCTCAGCA GGGTTCGCAC GGTCATCATT GATGAAGCCC ATATGGTGGA GCAGGATGAG
GCCCGGCTGA CTGGGCTGGG GGACGGGACA TCGCGCGCCT TCCGGCTTGA GCAGCTCGGC
ACACGCCTGA TGCGCGCGCG GGAGGAGCAC GACTTCCGCA TTGTCGCGCT GTCGGCGGTC
GCGGCACGGG CAGCGCCAGC CTTGGCCCGC TGGGTCTCCG ACGCGCCGGA CGCCATTCCC
ACAAGCTCAT CCTATCGCAG CACACGGCAG ATGCTGGGGC GTCTTGAAGT ACGCCCAGCC
GGCCAGTTCT CGATCCGTTA CAGCCTGATG GATGGTCATT CGCTGAAGTT TGACGACGAA
CGGCGGGATG ACTCGCCGTT CGTACCCGAT CCATTCCCGG CTGTTCCGGG GGGTATAAAT
CCGCAAGATG GACCCGAGGT ACGGATGCGC GCGCCCACGC TGTGGGCGGC GCTCAACCTG
GCCGCAAAAC GGCCGGACGG CTCATTGCCT TCGGTCCTCA TTTCGTTGAC ACAGAATATC
GACACCTTTG CCGCGACGTG CGCCGATCTC TTGGACAAAT GGCAGGACAC CGCACTTCCA
GATTATTGGG CGATTGAGGA GGACAACGAG GTTTGGGCGC GCTGTCTGGC GACTGCGATC
GACTATTTTA CAGCGGATTC AGTCGAATAC CGACTGCTAG CGCGCGGCAT CGTGGTGCAT
CACGGCAAGA TGCCGGGCCT CCTCGCCCGG CGGCTGAAGA CTGTTATTGA TCGCGGTTAT
GTTCGAGTCA TCATCGCCAC TTCGACCCTT TCGGAAGGGG TAAACATTCC GGTCAATTTC
CTGCTTATCC CAAGCGTCTT CAGAAGTAAT GCCGAGTTGC CGTTGCAGGA ATTCAGCAAT
CTGATCGGCC GGGCGGGACG GCCCGGTGTC GCAACAGAAG GCAGTGCGCT CGTTGTCCTG
CCCGAACGCA CTTACGAGAA CCGGTTCCGG CGGATCGTGC CGACCTATAA CCGACAGTGG
AACGGATACG AAAGCTTGGT TGCCCAGCTT GAGGCTGCGA CCGCGGCAGT AGGCGATCTC
ATCCCGGACG ATCAGGCATC AAGCCCGCTT GGCCATCTGC TGCGCGAATT AGAGCATGCA
TGGAAAGCGT TAGTGGGAGG CGGGACCGAG ACCGAATTTA CCGCTTGGCT TGAGCAAACG
GCCGTCACTG AGCAGGCTGC ATACCCGCCG TCCAGCCATG ATTATCTCGA TTCACTGGAC
GCATTTTTGA TCGCGGCGAT CCAGGAGGTC GAGGAGCTCA GGGGTATCGA ACTCGACCCT
GCCCAGCTTG AGGCGGAGTT GGCTAAGATT TGGCGACGTA CCTATGCGCA TGCTGCTTCG
CATGGTGAGG CGCATCTGGC GACGATCTGG CTGGCCCGCG GTAGAGCCGT AAAGACCCAG
TATCCCGATG CCGATCAGCG GCGACGCTTA TATAAGACGA GCCTGACGCC CCGATCTGCA
AAGCTATTGC TGGACCGCGC GGAGGCAATT CGCGTGAAGC TATCGGAGGG CCGCGATTAT
GCGAGATGGA CTACCGAAGA GCAGTTCGCC TTCATCCGCG ATGTGTTGTC ATTTTTATCG
GAAATTCCGG TTTTTGCGAT AGAAACAAAA CTCGGCAGAA AGAAAAAGTT CGATGATTGG
CCTATGTTGC TTCGTTGGTG GCTAGCCAAG CCGACGCTAG TGCGACAACC CCGCCCGAAC
GAGGTCACGA ATTGGTATGC CTTTGTGGCG AACAACTTCA TTTATCGCGG AACTTGGGGA
CTCGGTAGTG TCATCGGCCT ATTGCTGGAT ACGACCGAGG ACGGACAGCC CATTCGCGCG
CTGGAAATAA CCGACTGGCC CATGAGCGGT TTGCCGTGGA TCGGCTTCTG GCTGAAAGAG
CTTATCAGCT GGGGTACACT CGATCCGGTG GCTGCTTTTC TCCTCGCGCG TGGCGATGCC
GTTGATCGTC CGCAGGCTGA GCTTGATGCG AAGACCTATT ACGAAAGCCG TCCGGAGGGC
GAGGATGCCA ACGCTGTTCT CGACCCTCGG ACGATCCGTG CATGGGTGGA AGCTAGGCAG
CCCGCACGCG CAGCGCGGAT AGGCACAACG ACGATAGCGA TTAAAGTGGA ATGCGTTCGT
CCCGTCGAGG CGTATCGGCA GCAACGACTA GTCGTATTGC CGCTTGTGGA GGCGGACGCG
ATTGTTTGGC TTGACCCCGC CGGTTATGAG GTGGCGCGAA GCGTAAAGCC AGGCGATTGG
CCCGAGAAAC CCGCCCTGCT CCAGTTTGAG CTTCTGGTGG CTGTATCCTC CGTCATCGGC
GAGCCGTATC TGCCCCACCG TTGA
|
|---|
| Protein sequence | MANAATIAIA REIRENLAGQ ALTARQAKLY SQRLRRDMGR DDLASFGAGD IAGYLEEAML
LLESGWFERS ADITSPWRTS IKRAAEIIEW LSQSRLKPPG APLHLLAAAA YQLADYPAMA
LGHLRRLPEG EPLSELLRQF VRADFPGAFQ AAQTFWNNYR GLRAEGRIDP NDLEVAAVQH
TVMCVGTICA FLRTGGDVPV ERAVIKLEAL ALGFLHSRDS YSYLLARLTA ASARRFIETC
LWPQIDRLRL TSSGPAGNAL IQFARSAFAN KRALVWPAQA AGIAKLRDNS SFVLCTPTGS
GKTTVATLGA VQGLFADPPV GGAAGNLVLY LVPSRALAAE VESRLAEDLR GIAAEPVVVT
GLYGGVDWGP TDAWIQTDQP TVVICTFEKA DALLRYLGVL FLSRVRTVII DEAHMVEQDE
ARLTGLGDGT SRAFRLEQLG TRLMRAREEH DFRIVALSAV AARAAPALAR WVSDAPDAIP
TSSSYRSTRQ MLGRLEVRPA GQFSIRYSLM DGHSLKFDDE RRDDSPFVPD PFPAVPGGIN
PQDGPEVRMR APTLWAALNL AAKRPDGSLP SVLISLTQNI DTFAATCADL LDKWQDTALP
DYWAIEEDNE VWARCLATAI DYFTADSVEY RLLARGIVVH HGKMPGLLAR RLKTVIDRGY
VRVIIATSTL SEGVNIPVNF LLIPSVFRSN AELPLQEFSN LIGRAGRPGV ATEGSALVVL
PERTYENRFR RIVPTYNRQW NGYESLVAQL EAATAAVGDL IPDDQASSPL GHLLRELEHA
WKALVGGGTE TEFTAWLEQT AVTEQAAYPP SSHDYLDSLD AFLIAAIQEV EELRGIELDP
AQLEAELAKI WRRTYAHAAS HGEAHLATIW LARGRAVKTQ YPDADQRRRL YKTSLTPRSA
KLLLDRAEAI RVKLSEGRDY ARWTTEEQFA FIRDVLSFLS EIPVFAIETK LGRKKKFDDW
PMLLRWWLAK PTLVRQPRPN EVTNWYAFVA NNFIYRGTWG LGSVIGLLLD TTEDGQPIRA
LEITDWPMSG LPWIGFWLKE LISWGTLDPV AAFLLARGDA VDRPQAELDA KTYYESRPEG
EDANAVLDPR TIRAWVEARQ PARAARIGTT TIAIKVECVR PVEAYRQQRL VVLPLVEADA
IVWLDPAGYE VARSVKPGDW PEKPALLQFE LLVAVSSVIG EPYLPHR
|
|---|
| |