| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Nham_4441 |
|---|
| Symbol | |
|---|
| ID | 4025452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrobacter hamburgensis X14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007960 |
|---|
| Strand | - |
|---|
| Start bp | 88387 |
|---|
| End bp | 89517 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637964949 |
|---|
| Product | TrbL/VirB6 plasmid conjugal transfer protein |
|---|
| Protein accession | YP_571857 |
|---|
| Protein GI | 92109570 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3704] Type IV secretory pathway, VirB6 components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.418646 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAACA GCTTCAGCAT TACCTCGCTT CTGCAATCGG TCGACCAGCT CGGTCAGAAC
TATGTATCGA CCGCCTACCA GGCCTTGGCG AATGCGGCGA CCTCGGGCGG CGCGACCAGC
GTCGCCGGCT CGCTGCTCAC GCTCTACATG ATTTTCTGGG GTATTGGCAT CTGGCAAGGC
ACATCAACCG GCGGTCCCGC CGATCATGCC TTCCGGCTGT TCCGCGCGGT GCTGATTTAC
ACCATGGCGA CGAAGTGGGG TGACTTCCAG ACACTGGCCT ATAACGCTCT CAACGACGGC
CCGTCGGCGA TCGGCAATGC GCTCTTGAGC GCGGTCACGT CGGCGAACAA CACCGGCACG
TCTGCGAATC TGAACTCGGT CAATGGCGTG CAGTCGGCGC TGCAGAACAT GTGGGATACC
ACGAACAGCG CCACAGAGGC ATTCCTGCAA AACGCCGGCA TCACCAATTG GGGACCCTAC
ATCTTCGCGG CCGTCTTCTA CGTGGTGATG GCCATCCTGA TCGGCTTCGC AATCTTCCTC
ATCGTGCTGT CGAAGATGTT CATGTGGCTG CTTTTAGCGC TGGCACCCTT GTTCATCATC
CTGCTGCTGT TCGGCGTCAC GACGCGGTTC TTCAGTGGGT GGCTGAGCGC GCTGGTCCAG
TATTTCCTGG TGCAGGTCCT CGTCTATGCA TTTCTGGCCT TCTACGTCTC GCTGATCCAG
CAGACGATCG ACACGCTCAA CAGCGTCGCC AATTCCAAGT CGGCGACCTG GGCAACCATC
GGCCCGGTCG TGCTGCTCGC GATTATCGGC ATCCTACTGC TGAGCCAAAT CAACAATATG
GCGGCGGCTA TCGCCGGTGG CGTTCCGATC TTCGCGCCTC GCATCGGCGC GGTGCTTGCG
ACCGCAACCG GCTATCGGCT TGGCGCGGCC GCAAACCGAG CGCGCCTCGC CTTCCGCAAT
CCGCTCAATC CCGCCTCGAC GTCGCGGCGT GAGGAGTTGG CGTCACGTCA ACGCGCGCGT
GTTGGCTTGC GCGCAGCCTC CTGGGCGCAG TCGGCGGAAT TCCGGCGCCT GGCCGACCAG
CTCCGCAATC CCAACGTTCC GCCGGCGTCG AGCGGGAGTG GCCGGCCATG A
|
|---|
| Protein sequence | MGNSFSITSL LQSVDQLGQN YVSTAYQALA NAATSGGATS VAGSLLTLYM IFWGIGIWQG
TSTGGPADHA FRLFRAVLIY TMATKWGDFQ TLAYNALNDG PSAIGNALLS AVTSANNTGT
SANLNSVNGV QSALQNMWDT TNSATEAFLQ NAGITNWGPY IFAAVFYVVM AILIGFAIFL
IVLSKMFMWL LLALAPLFII LLLFGVTTRF FSGWLSALVQ YFLVQVLVYA FLAFYVSLIQ
QTIDTLNSVA NSKSATWATI GPVVLLAIIG ILLLSQINNM AAAIAGGVPI FAPRIGAVLA
TATGYRLGAA ANRARLAFRN PLNPASTSRR EELASRQRAR VGLRAASWAQ SAEFRRLADQ
LRNPNVPPAS SGSGRP
|
|---|
| |