Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_4147 |
Symbol | tolB |
ID | 4024669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 4618605 |
End bp | 4619954 |
Gene Length | 1350 bp |
Protein Length | 449 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637964355 |
Product | translocation protein TolB |
Protein accession | YP_571267 |
Protein GI | 91978608 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATTGCC CGAACATGCC GCTCAACTTG AATCGCAGAC AATTGATGCT CTCCGCAGCG AGTGCGGCCG GCGCGCTCGC GCTCGGCCCG GCGCGTGACG CTTTCGGCCA GGCCCGCGTG CAGATCACCG AGGGCAACGT CGCGCCGCTG CCGATCGCGA TCCCGAACTT CGTCGCCGGC ACGCCGTCGG ACAATGAAGT CGGCGGCGGC GTCAGCCAGG TGATCACCAA CAACCTCAAG CGTAGCGGGT TGTTCGCGCC GATCGATCAG GCCGCTTATC TCGAGAAGAT CACCAACATC GACGTGCCGC CGCAGTTCAA GAGCTGGACC AGCATCAACG CCCAGGCGCT GGTCACCGGC CGGATGACGC GGCAGCCGGA CGGCCGCCTC AAGGCCGAGT TCCGGCTGTG GGATGTCGCC ACCGGCCAGC AGCTCGCGGG CCAGCAGTAT TTCACCTCGC CGGAATACTG GCGGCGCATC GCCCACATCA TCTCCGACCA GATCTACGAA CGGCTCACCG GCGAGAAGGG ATACTTCGAC AGCCGCGTGG TGTTCATCGA TGAAAGCGGC CCGGCGGACC GCCGCGTCAA GCGGCTGGCG CTGATGGACC AGGACGGCGC CAATGTTCGC TATCTGACCC GCGGCAGCGA TCTGGTGCTG ACGCCCCGGT TCTCGCCGTC GACCCAGGAA ATCACCTATA TGGAGTTCGG CCAGGGCGAC CCGAAGGTCT ATCTGTTCAA CATCGAGACC GGGCAGCGCG AGATCGTCGG CAACTTCCCC GGAATGTCGT TCGCGCCGCG GTTTTCGCCG GACGGTCAGC GCATCATCAT GAGCCTGCAG CAGGGCGGCA ATTCCAATCT GTTCGTCATG GACCTGCGCT CGAAGACGAC GACACGGCTG ACCGACACGC CGGCGATCGA CACCTCGCCG TCCTATTCGC CCGACGCAGC CCGGATCTGC TTCGAGTCCG ACCGCGGCGG CAAGCCGCAG ATCTACATCA TGCCGGCGGG CGGCGGGCAG GCGCAGCGCA TTTCCTTCGG CGACGGGAGC TATTCGACCC CGGTATGGTC GCCGCGCGGC GACTACATCG CCTTCACTAA GCAGGGCGGC GGTCAGTTCG CGATCGGCAT CATGAAGCCC GACGGCTCTG GCGAGCGAAT TCTGACCTCG GGCTTCCACA ATGAGGGGCC GACCTTCGCG CCGAACGGCC GCGTGCTGAT GTTTTTCCGC GATCCGGGCG GGAACGCGGG GCCGTCGCTC TATACGGTCG ACGTGTCGGG CCGCAACGAA TTGCGGGTTC CGACCCCGGG CTACGCGTCC GACCCGGCCT GGTCGCCGCT GCTGTCATAG
|
Protein sequence | MDCPNMPLNL NRRQLMLSAA SAAGALALGP ARDAFGQARV QITEGNVAPL PIAIPNFVAG TPSDNEVGGG VSQVITNNLK RSGLFAPIDQ AAYLEKITNI DVPPQFKSWT SINAQALVTG RMTRQPDGRL KAEFRLWDVA TGQQLAGQQY FTSPEYWRRI AHIISDQIYE RLTGEKGYFD SRVVFIDESG PADRRVKRLA LMDQDGANVR YLTRGSDLVL TPRFSPSTQE ITYMEFGQGD PKVYLFNIET GQREIVGNFP GMSFAPRFSP DGQRIIMSLQ QGGNSNLFVM DLRSKTTTRL TDTPAIDTSP SYSPDAARIC FESDRGGKPQ IYIMPAGGGQ AQRISFGDGS YSTPVWSPRG DYIAFTKQGG GQFAIGIMKP DGSGERILTS GFHNEGPTFA PNGRVLMFFR DPGGNAGPSL YTVDVSGRNE LRVPTPGYAS DPAWSPLLS
|
| |