| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4072 |
|---|
| Symbol | |
|---|
| ID | 4024589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4524803 |
|---|
| End bp | 4525417 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637964275 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_571192 |
|---|
| Protein GI | 91978533 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.404237 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTGA TCACAGACAA TACCGAAGCC GACATGCGGC GCCGCATCCT GGTGGTGGCG
GAGCGGCTGT TCCGTCAGAT CGGCTATCAG AAGACCACCG TGGCCGATAT CGCCAAGGTG
CTGCAGATGA GTCCCGCGAA TGTGTATCGC TTCTTCGATT CAAAGAAAGC GATCCACAAG
GGTGTGGCGC GGCATTTGAT GGGCGAGGTC GAGCAGGCGG CGGAGAACAT CGCTGCGGCG
GATGGTCCGG CGGCCAAGCG GCTGCGCGAC CTGCTCGGCA CTATCCATCG CATGAACCGG
GAGCGCTACG TCGGCGACGA AAAACTCCAC GAGATGGTCG CCATCGCAAT GGAGGAGAAC
TGGGACGTCT GCATCAATCA CATGGAGCAC ATCCTCGCCG CCATCGAGCA GGTGGTTGCG
CAGGGCGCGG CGAGCGGCGA ATTCGATGCG CCCGACGTGC CACTGGCGGC GGGTTGCACG
TGCACCGCGA TGGTTCGCTT TTTCCACCCG CAGATGATCG CGCAGAGCTT TGACAATGAG
GGGCCGACGC TCGACCAGAT GGTCGACTTC GTGCTTGCTG GTCTGCGCGC CGGCCGCCAC
ACCGCTTCTC CCTAA
|
|---|
| Protein sequence | MTLITDNTEA DMRRRILVVA ERLFRQIGYQ KTTVADIAKV LQMSPANVYR FFDSKKAIHK
GVARHLMGEV EQAAENIAAA DGPAAKRLRD LLGTIHRMNR ERYVGDEKLH EMVAIAMEEN
WDVCINHMEH ILAAIEQVVA QGAASGEFDA PDVPLAAGCT CTAMVRFFHP QMIAQSFDNE
GPTLDQMVDF VLAGLRAGRH TASP
|
|---|
| |