| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_4048 |
|---|
| Symbol | |
|---|
| ID | 4024565 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4498564 |
|---|
| End bp | 4500273 |
|---|
| Gene Length | 1710 bp |
|---|
| Protein Length | 569 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637964251 |
|---|
| Product | MscS mechanosensitive ion channel |
|---|
| Protein accession | YP_571168 |
|---|
| Protein GI | 91978509 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0668] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.138882 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.12233 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCGGTAT TTGCGAAAGC GATCTTTCGA TCGCTGTTGA TTGTGTGGGC AATTTTGGCG
GCGAACGCCG CGTTCGCGCA AATTCCAGCA CCAAACGGCA ATGGAAATGG CGCCAATCCT
CCAGCCAAGG TGGAGGAGAA GCCTGCCGAT CCGCTCGGCC GCAATACGCC GGCCGGAATG
GTTACAGGCT TCATCGATGC CGCCGCCGAA CAGAATTACG ACAAGGCTGC CCAATATCTC
GATCTCAGCC AGGAGAAGGG CGCCTGGGGT CCAAGCGTCG CGCAGCAGCT CCAACGCATT
CTCGACCAGG GCGGCTACGT TTTCTCGCGG CTGCGGTTGA GTTCGGAACC GGCGGGCGAT
CAGGACGACG GGCTGGCCCC AGACCAGGAC AAGTTCGGCG CCGTGCGCAC CGATCACGGC
ACGGTTGATC TGATCGCGCA GCAGGTCGAC GGCAAGGATG GCGGCAAGAT CTGGCTGGTC
TCGGCCAAAA CGGTCGGCGA CCTCCCCGCG TTGTCGCGCA CGGTGACGTC GAGCCTGGTC
GACAGGATTC TGCCCTATGC GCTCCGCGAC GAATACCGGC TCGCCGGCGC TCCGGTCGGT
CATTGGCTGG CGGTCGTCGT GCTCGCGCTG CTGTCCTTTG GCGTGGTGTG GTCGATCACC
GCCGCGATCT TCTGGGTGAT CTTTCGTCTC CGAAAACGTC AGGACTCGCG TATCCGCCGT
GTTCTGAACG CCTCGGCGTT GCCGATCCGG CTTTTTCTGA CGGCCATGGT GCTGCGCATC
GCGATGGTGC TGACCGGCGT CTCGATCGTC GCGCGGCAGC ATATGTCGGG CGCCACCGAA
CTGCTCGGCT GGATCGCGCT GTCCTGGATC GTCTGGCGCG TGGTCGATGC TCTCGCCGAG
TTCACCATCG CCCGGATGAC GCTGCGCGGC CGGCTGTCGA TGCTGTCGGC GATCAACTTC
CTGCGGCGGA GCATCAAATT CGTCATCATT GCCCTCGCGT TGATCCTCGG ACTCGACGCG
CTCGGCTACA ACATCACGGC CGGCCTCGCA GCCCTCGGCA TCGGCGGTAT CGCGATCGCT
CTCGGCGCGC AGAAGACCAT CGAGCATCTG GTCGGCAGTC TGACGCTGGT GACCGACCAG
CCGATGCGGG TCGGCGATTT CTGTAAGTTC GGCGAGACCT CGGGCACGAT CGAGGACATC
GGAATGCGGT CGACCCGGAT CCGGACGCTC GACCGCACAC TCGTCACCGT GCCGAACGGC
GCGCTGGCGG CGGTGCAGAT CGAGAACTTC AGCCGACGCG ACAAGTTCTG GTATCACCCG
ACGCTGGATC TCCGCTACGA CACCAAGCCC GATCAGATGC GGGCGCTGAT CGCATCGATC
CGCGAGATGC TGCTGGAGCA TCCGAAAGTC GACAACGACC CGGCGCGGGT CCGGCTGCTT
GGCTTCGGGC CCAATTCGCT CAAGGTCGAA ATCTTCGCCT ATGTCCATGC GGTCAGCGGC
GACGAGTTCC TGGAGGTCCA GGAAGACCTG ACGCTGCAGG TCATGGAGCT GGTCGAGGCG
TCCGGAACGG GCTTCGCGGT GGCCTCCCAG CAGACCGTCT ATCTGAGATG CGACGGAACG
CCGTTGGCCG ATCGTTCGCC GCAGCTTGCG CCGTCCGAGG ACGCGGACGA CGAGCGCGCC
CCCCAGCGCC GGGTAGCGGC GCGTGCCTGA
|
|---|
| Protein sequence | MAVFAKAIFR SLLIVWAILA ANAAFAQIPA PNGNGNGANP PAKVEEKPAD PLGRNTPAGM
VTGFIDAAAE QNYDKAAQYL DLSQEKGAWG PSVAQQLQRI LDQGGYVFSR LRLSSEPAGD
QDDGLAPDQD KFGAVRTDHG TVDLIAQQVD GKDGGKIWLV SAKTVGDLPA LSRTVTSSLV
DRILPYALRD EYRLAGAPVG HWLAVVVLAL LSFGVVWSIT AAIFWVIFRL RKRQDSRIRR
VLNASALPIR LFLTAMVLRI AMVLTGVSIV ARQHMSGATE LLGWIALSWI VWRVVDALAE
FTIARMTLRG RLSMLSAINF LRRSIKFVII ALALILGLDA LGYNITAGLA ALGIGGIAIA
LGAQKTIEHL VGSLTLVTDQ PMRVGDFCKF GETSGTIEDI GMRSTRIRTL DRTLVTVPNG
ALAAVQIENF SRRDKFWYHP TLDLRYDTKP DQMRALIASI REMLLEHPKV DNDPARVRLL
GFGPNSLKVE IFAYVHAVSG DEFLEVQEDL TLQVMELVEA SGTGFAVASQ QTVYLRCDGT
PLADRSPQLA PSEDADDERA PQRRVAARA
|
|---|
| |