Gene RPD_3979 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3979 
Symbol 
ID4024496 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp4427175 
End bp4428047 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content68% 
IMG OID637964182 
ProductN-formylglutamate amidohydrolase 
Protein accessionYP_571099 
Protein GI91978440 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3931] Predicted N-formylglutamate amidohydrolase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCTCG ACTTTGCGAC GCTGAGACGA TACCAGCGTT GTCCGGGGCG GGCTGCTGAT 
TTGATAGGCA CTTCACGAAT GAACGGCGCA CGTGATGAAT CCCTACGCCT CGCGCCCGGA
GAGGCTCCGG TCATCGAGCG GAACACGGCG GGAGCATCGC CGTTTCTGCT GGTTTGCGAC
CATTACGGCC GCCGGATCCC GCCGCAGCTC GGCGATCTCG GCCTGCCCGA AGCCGAGCTT
GCCCGCCATA TCGCCTGGGA TGTCGGCATC GCCGGCGTCG CCGAGCGCCT GGCGGACGCG
CTCGACGCGC ATCTGATCGC GCAGCGCTAT TCGCGGCTGG TGATCGACTG CAACCGGCCG
CCGAGCGCGG AGAGCTCGAT TCCGCTGGTC AGCGAAGCGA CCACGATTCC CGGCAATGAC
GGGCTGACGC GCGCCGAGGC CGAGCAGCGC CGGCGGTTGA TCTTCGATCC CTATCATGCG
CGCATCGACG CGGCGATCAG CGCCCGGCTC GCCGCCGGCC GGCCGACCGT CCTGCTGGCG
CTGCATTCGT TCACACCGGT GTATCACGGC ATGGCGCGGC CCTGGCACAT CGGCACGCTG
TATCAGCACG ACCGCGTGCT GCCGCCGCTG CTGCTCGCCG AGCTGCGCCG CGAGAGCGGC
CTCGTGGTCG GCGACAACCA GCCTTATGCG GTGAGCGACG GCACCGATTA TTCAATCCCG
GTGCATGGCG AGGCGCGCGG TCTGATCAAT TCCGGCATCG AGATCCGCCA GGACCAGATC
ACATCCGAGG ATGGTCAGGC CGAGTGGGCC GAGCGACTGG CGCGCGTGCT CACTGCGATC
GAAGCGACGC TGCGCGACAA GGCGCTGGCG TAG
 
Protein sequence
MDLDFATLRR YQRCPGRAAD LIGTSRMNGA RDESLRLAPG EAPVIERNTA GASPFLLVCD 
HYGRRIPPQL GDLGLPEAEL ARHIAWDVGI AGVAERLADA LDAHLIAQRY SRLVIDCNRP
PSAESSIPLV SEATTIPGND GLTRAEAEQR RRLIFDPYHA RIDAAISARL AAGRPTVLLA
LHSFTPVYHG MARPWHIGTL YQHDRVLPPL LLAELRRESG LVVGDNQPYA VSDGTDYSIP
VHGEARGLIN SGIEIRQDQI TSEDGQAEWA ERLARVLTAI EATLRDKALA