Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3959 |
Symbol | |
ID | 4024475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 4406360 |
End bp | 4407988 |
Gene Length | 1629 bp |
Protein Length | 542 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637964161 |
Product | recombinase |
Protein accession | YP_571079 |
Protein GI | 91978420 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1961] Site-specific recombinases, DNA invertase Pin homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCGCG TCGCTATCTA CGCTCGTTTT TCGAGCGACC TGCAAAACGA TAAATCGGTC GACGACCAGA TCGCGTTCTG CCGCGAGGTC TGCGCGCGCA ATGGCATGAC GGTGGTGTTG ACCTTCGAGG ACCGCGCTGT GTCCGCATCG TCGGCAAAGA ATCGTCCCGG CTTCATCGCG CTGATGCGCG CTGCGTCGGC AAGGCTGTTT GACGTCGTCG TTGCCGAAGA CATGGATCGC ATTTTTCGCG ACCAAGCCGA TTATCACGCT GCTCGCAAGG AACTCGATTT TCTCGGCATC ACCATCCACA CAGCAACCGG GAAAGTGACC AAGATCGACG GCGCGCTGCG GGCATTGATG GGCGAAATGT ATCTCGAAAA CCTGGCGCTG CACGTGCGCC GCGGACTCGA GGGCGTGATC CGTGACGGAC GCCACGCCGG CGGACGCGCG TATGGCTATT CCACCGTCCC GGGTTCCCCG GGCGAGCTTG TCATCGATGA TGCGCAAGCC AAGATCGTGC AGAGAATCTT CGCGCGCTTT GTTGCCGGCG TCACGCCGCG CGCCATTGCT GCCGAACTTA ATGCCGATCG TGTTGCGCCG CCGCGCGGCA CCAGGTGGAA TGCATCTACT ATCAATGGCA ACAACGCGCG CGGTCACGGC ATGCTACTCA ACGAGCTTTA TGCCGGCCGT ATCGTCTGGA ACAAGGTGCG GATGGTCAAG GATCCGACCA CGGGCAAACG CATCTCGCGA ATCAATGCGA AGGAGCACCA TCGAATTACT GAGGCGCCGC AACTGCGCAT CATCGATGAT GTGACCTGGA ACGCGGCGCA AGCCATTAAG CTAAAGCGCT CGCACCTCGG CGCGACTAAA TCCCGTGCGC CACGGCGTCC GCTTTCGGGC TTGCTGCGGT GTGGATCCTG CGGCGGCGGA ATGGTGTCGA TCGGCAATCG CAAGCGGTCG GCGCGGCTGC AATGTGGTAC CTACAAGGAG AGTGGGTCCT GCACCAACAG CCGTAAGGTC AACCGCGACG CCGTTGAAGC GGCCGTGTTT GCGGGACTGA AAGACGAACT GTCCAATCCG ATTGCGATTA CAGAATACAT CAAGGCCTAT AACGACGAGC GGCGCCGCCT TTCACACGAA GCTGGCGACC AGATCAGCAA GCTGACACGC CGCAATGCCG AGGTCTCACG CGAACTTGAG CGCCTGATCG ACGCGATCAC CCAAGGCGTC GATCTCGCCA CCTTGGTGCC AAGGATCAAG GCGCTCGAAA TCGAACGCGC CGACATAGAC GGCAAGCTGA AATGCGCCAG CGATGCCGAT ATTGTCACAT TGCATCCCGC TACGATCAAT CAATATCGCG CCGATGTCGA AAGACTGGCC GACCTTGCCG CGGAGCACAG TGACTTCGTG GAATCTGCGG AATTGATCGA AGCGTTGCGG CGGCTGGTGG CGGGAGTCAT CATCCACGCC GAACCGAACG GCCGGGGCTT CAACGTCGAA GTGCAGGGAC GACTGGCAAA ATTGACGAAT TCGGACTTGT TCCCGGGCCG TTCTGAGGGA GGGGGGATCA GTGGTAGCGG GAGAGGGACT CGAACCCCCG ACCCCAGGAT TATGATTCCC GTGCTCTAA
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Protein sequence | MIRVAIYARF SSDLQNDKSV DDQIAFCREV CARNGMTVVL TFEDRAVSAS SAKNRPGFIA LMRAASARLF DVVVAEDMDR IFRDQADYHA ARKELDFLGI TIHTATGKVT KIDGALRALM GEMYLENLAL HVRRGLEGVI RDGRHAGGRA YGYSTVPGSP GELVIDDAQA KIVQRIFARF VAGVTPRAIA AELNADRVAP PRGTRWNAST INGNNARGHG MLLNELYAGR IVWNKVRMVK DPTTGKRISR INAKEHHRIT EAPQLRIIDD VTWNAAQAIK LKRSHLGATK SRAPRRPLSG LLRCGSCGGG MVSIGNRKRS ARLQCGTYKE SGSCTNSRKV NRDAVEAAVF AGLKDELSNP IAITEYIKAY NDERRRLSHE AGDQISKLTR RNAEVSRELE RLIDAITQGV DLATLVPRIK ALEIERADID GKLKCASDAD IVTLHPATIN QYRADVERLA DLAAEHSDFV ESAELIEALR RLVAGVIIHA EPNGRGFNVE VQGRLAKLTN SDLFPGRSEG GGISGSGRGT RTPDPRIMIP VL
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