| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3862 |
|---|
| Symbol | |
|---|
| ID | 4024378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4300205 |
|---|
| End bp | 4301356 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637964066 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_570984 |
|---|
| Protein GI | 91978325 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.938574 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGCC CGCGCTTTCT CAGCCGCTCC GACCTCATCG GTCTCGCCGC GCTTGCTCTG
CTCCTGGTCG TCATCCTGCC GCTCTCGTTG GATGTGTTCC GCCTCAACCT TGTCGCGAAG
TACCTGACCT ACGCCTTCGT GGCACTCGGT CTGGTGCTGT GCTGGGGTTT CGGCGGCATT
CTCAGCCTCG GGCAGGGTGT GTTCTTCGGC CTGGGCGGCT ACGGCATGGC GATGTATCTG
AAGCTGGAAG CTTCCAGCGT CGCCAACACC AAGATCCAGT CGACTCCGGG CATTCCGGAT
TTCATGGACT GGAATCAGAT CACGCAGTTG CCGTTGTTCT GGCAGCCGTT CCACAGTCTG
ACGCTGACGA TCCTCGCGAT CCTGATCGTG CCGACGCTGT TCGCCTATCT GGTCGGCGCG
GCGATGTTCA AGCGGCGGGT CGGCGGGGTC TACTTCGCGA TCATCACCCA GGCGATCGCG
GCGATCCTGA CGATTCTGAT CATCGGCCAG CAGGGCTACA CCGGCGGCAT CAACGGCATC
ACCGATTTGC GCACGCTGAA GGGGTGGGAC ATCCGTCCCG ACCACACCAA GGTGATTTTG
TACTTCGTCG AGGTCGCCTT CTTGTTCGGT TGCATCCTGC TGGCGCTGTT CGTCCGCCAC
GCCAAGCTCG GCCGCATCCT GGTGGCGATG CGCGAGAAGG AGGACCGGGT CCGGTTCTCC
GGCTACAGCG TCGCCAATTT CAAGATCTTC GCGTTCTGTC TGGCGGCGAT GTTCGCGGCG
ATCGGCGGCG CGATGTTCAC GCTGAATGTC GGTTTCATGT CGCCGTCCTT CGTCGGCATC
GTGCCGTCGA TCGAAATGGT GATCTACACC GCGGTCGGCG GCCGGATGTC GATTTTCGGC
GCGATTTACG GAACGCTGCT GGTGAATTTC GCCAAGACCA GCCTGTCGGA ATCCTTCCCG
CAGCTCTGGC TGTTCGGCCT CGGCGCGCTG TTCATCGCGG TGGTGCTGAT CTTCCCGAAC
GGTCTCGCCG GGATCTGGCG CGATCACGTC CAGCCGCTGA TCGACAGGCT GATCAGCAAG
CGCAAGTCCG GATCGGATCA CAGCAACGGC AAGTCGTTCG GCAGGGTCGC CGACGGCGCC
CCGGCGGAAT AG
|
|---|
| Protein sequence | MESPRFLSRS DLIGLAALAL LLVVILPLSL DVFRLNLVAK YLTYAFVALG LVLCWGFGGI
LSLGQGVFFG LGGYGMAMYL KLEASSVANT KIQSTPGIPD FMDWNQITQL PLFWQPFHSL
TLTILAILIV PTLFAYLVGA AMFKRRVGGV YFAIITQAIA AILTILIIGQ QGYTGGINGI
TDLRTLKGWD IRPDHTKVIL YFVEVAFLFG CILLALFVRH AKLGRILVAM REKEDRVRFS
GYSVANFKIF AFCLAAMFAA IGGAMFTLNV GFMSPSFVGI VPSIEMVIYT AVGGRMSIFG
AIYGTLLVNF AKTSLSESFP QLWLFGLGAL FIAVVLIFPN GLAGIWRDHV QPLIDRLISK
RKSGSDHSNG KSFGRVADGA PAE
|
|---|
| |