| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3814 |
|---|
| Symbol | |
|---|
| ID | 4024330 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 4253808 |
|---|
| End bp | 4254992 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637964018 |
|---|
| Product | lipid-transfer protein |
|---|
| Protein accession | YP_570936 |
|---|
| Protein GI | 91978277 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0183] Acetyl-CoA acetyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0363497 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCAC CTGTTTACGT CGCCGGCGTC GGCATGATCC CGTTCGTGAA GCCTGGCGCC
AACGAGCCGT ACCACCTGAT GGGCGCCGAA GCGGCGCGGC TGGCGCTGCG CGATGCCGGC
GTCGGCTATG ATGCCATCCA GCAGGCCTTC GTCGGCTACG TCTACGGCGA CTCCACCTGC
GGCCAGCGTG CGCTGTACCA GGTCGGGATG ACCGGCATTC CGATCGTCAA CGTCAACAAC
AACTGCTCGA CCGGTTCGAC GGCGCTGTTT CTGGCGCGGC AGGCTATCGC CTCGGGCGCC
GCTGATTGCG TGCTCGCGCT CGGCTTCGAG CAGATGAAGC CCGGCGCGCT CGGCTCGGTG
TTCGACGATC GGCCGAGCCC GTTCGATGAT TTCGACGCCG CCGCCGGTCG GCTGATCGAC
GTGCCCGGCG TGCCGCTGGC ACTGCGCTAT TTTGGCGGCG CGGGTCTCAG TCACATGCAG
AAATACGGCA CGCCGCTGTC GTCCTTCGCC AAGGTGCGAG CGAAGGCCAG CCGCCACGCC
GCGAAGAATC CGCTGGCTCT GTTCCGCAAG GAAGTGACCG CGGACGACGT GCTGAACGAT
CAGGTGATCT GGCCGGGCGT GATGACGCGG CTGATGGCGT GTCCGCCGAC CTGTGGCGGC
GCTGCCGCGG TGTTGGTCTC GGAGAAGTTC GCGCTGCGCA ATGGATTGCG GCAGGACGTC
AGGATCGCCG CTCAGGCGAT GACCACCGAT ACGCCGTCGA CGTTCGACGC CGGCGATATG
ATGCGTGTGG TCGGTTACGA CATGTCGCGT GCCGCTGCGA ACAGTGTCTA CGAGGCCGCC
GGCGTCGGGC CGAACGACAT CGACGTCGTC GAGCTGCACG ACTGCTTCGC CCATAACGAG
CTGATCACCT ACGAGGCGCT CGGCCTGTGT CCGGAAGGCG GCGCTGAAAA GTTCATCGAC
GATGGCGACA ACACCCACGG CGGCAAGGTC GTCACCAACC CGTCCGGCGG ATTATTGTCG
AAGGGCCATC CGCTCGGCGC CACCGGCCTC GCGCAGTGCT ACGAGCTGAC CCGGCAACTG
CGCGGCGGCG CAGAAGCGAC TCAGGTGGAG GGCGCCAAGC GCGCGCTGCA GCACAATCTC
GGTCTCGGCG GCGCCTGTGT GGTGACGCTG TACGAACGCG CCTGA
|
|---|
| Protein sequence | MASPVYVAGV GMIPFVKPGA NEPYHLMGAE AARLALRDAG VGYDAIQQAF VGYVYGDSTC
GQRALYQVGM TGIPIVNVNN NCSTGSTALF LARQAIASGA ADCVLALGFE QMKPGALGSV
FDDRPSPFDD FDAAAGRLID VPGVPLALRY FGGAGLSHMQ KYGTPLSSFA KVRAKASRHA
AKNPLALFRK EVTADDVLND QVIWPGVMTR LMACPPTCGG AAAVLVSEKF ALRNGLRQDV
RIAAQAMTTD TPSTFDAGDM MRVVGYDMSR AAANSVYEAA GVGPNDIDVV ELHDCFAHNE
LITYEALGLC PEGGAEKFID DGDNTHGGKV VTNPSGGLLS KGHPLGATGL AQCYELTRQL
RGGAEATQVE GAKRALQHNL GLGGACVVTL YERA
|
|---|
| |