Gene RPD_3792 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3792 
Symbol 
ID4024308 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand- 
Start bp4232329 
End bp4233021 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content69% 
IMG OID637963996 
ProductNnrU 
Protein accessionYP_570914 
Protein GI91978255 
COG category[S] Function unknown 
COG ID[COG4094] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.252316 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGACCGGCT GGACTGAATT CATCGTCGCC TTCGTCGTGT TCCTGCTCAG CCACGCCATT 
CCGGCGCGTC CTGCGGTGCG GGCGAGGCTG GTCGGCGCGC TGGGCGAGGG CGGGTTTCTC 
GCCGCCTACA GCGTCGCGTC GCTGATCGTC CTGACCTGGC TGATCGTCGC GGCGGGCCGC 
GCGCCTTACG TCGAGCTGTG GCCGTTCGCG CGCTGGCAGA TGTGGGTGCC CAATCTGGCG 
CTGCCGCTGG CCTGCCAACT CGCCGCATTC GGGATCGGCG CCGCCAATCC GCTGTCGTTC 
GGCGGCGATC CCGGCAAGCG GTTCAATCCG GCGCAGCCCG GCGTCGTCGG CATCGTCCGG 
CATCCGCTGC TATGGGCGAT CGCGCTGTGG GCGGCCGCGC ATATGGTGCC GAACGGCGAC 
CTCGCCCATG TCGGGCTGTT CGGTTTCTTC ACGCTGATCG CGCTCGCCGG CATGGTGGTG 
ATTGATCGGC GTAAGCGGCG GCAGCTCGGC GGCGAGACCT GGAATGCGCT GGCGGCACGG 
ACTTCGTTCT GGCCGTTCGC GGCTTCGATG ACGGGACGCT TCAAGCCGCA ATCGTGGCGG 
ATCAGCCTGC TGCGGTTCGC GATCGGCCTG ACCGCCTGGT TGGTGTTGCT GCTGCTGCAT 
CCGATGGTGA TCGGCGTCTC GCCGTTGCCC TGA
 
Protein sequence
MTGWTEFIVA FVVFLLSHAI PARPAVRARL VGALGEGGFL AAYSVASLIV LTWLIVAAGR 
APYVELWPFA RWQMWVPNLA LPLACQLAAF GIGAANPLSF GGDPGKRFNP AQPGVVGIVR 
HPLLWAIALW AAAHMVPNGD LAHVGLFGFF TLIALAGMVV IDRRKRRQLG GETWNALAAR 
TSFWPFAASM TGRFKPQSWR ISLLRFAIGL TAWLVLLLLH PMVIGVSPLP