| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3788 |
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| Symbol | |
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| ID | 4024304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4227536 |
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| End bp | 4229854 |
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| Gene Length | 2319 bp |
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| Protein Length | 772 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963992 |
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| Product | phytochrome |
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| Protein accession | YP_570910 |
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| Protein GI | 91978251 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0317187 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACTCGG GCGTTGACAA TTTAGCCGAG TTGAAATTCA GCGCAATCGG GCCGACCGCG
TGCGACCGCG AGGCGATTCA TCTCGCCGGC TCGATCCAGC CGCACGGCGC TTTGCTCGCG
GTGACGCCAG AGGATCTGCA GATCGTCCAT GCCGGCGGCG AAACTGCAGC GCTGTTGGGC
GTTTCCATCG AATCGCTGGC TGGAGTCTCT GCGTTCACGA TTTTCTCGGG CGACCAGATC
GCGCGGCTGC GCGCCCTGTT GGGCCCCGAT CGCAAGATTG AACGGCCTCT GCACGCCTTC
ACGCTGAAAG CCGCCGATGC GACACCGGTC GACGTCGTGG TTCACCAGGC CTCCGGCCTG
CTCGTGCTGG AGTTCGAGCC ACGCCGCGAG CCAGCTCCAA ACAATTCGCT CGCGCTCGTG
CAATCGATGA TCCGTCACGT GCAGCGCGCC GGAACCGTGC AGGCGTTTTG CGACGCGGTG
GTCGCCGAGG TTCGCGCCGT CACCGGCTTC GATCGGGTGA TGATCTATCG CTTCATGCCG
GATTGCAGTG GCGAGGTGAA AGCGGAGTCG CGCGCGTCCG GAATGGAGAG CTTCCTCGGG
CTGCGGTATC CGGAGTCCGA CATCCCGAAG CAGGCCCGCG CGCTGTATCT CGCGAACTGG
ATCCGCGCGA TCCCCGACGC CCGCTACGCG CCGGCGCGGA TCGTGCCTAT GATCGATCCT
CGCACCGGAC TGCCGCTCGA TCTAAGCCAG AGCGTGATCC GCAGCGTATC GCCGGCGCAC
CGGCTGTATC TCGCCCATAT GGGCGTGGTG GCTTCAATGT CGCTTTCGAT CATTCAGCAT
GGCAGGCTGT GGGGCCTGAT TGCCTGCCAT CACAGCTCGC CGCGCTATCT ACCCTATCGG
ATGCGGGAGG CGTGCGAGCT TTTCGCCGAG ATGGCGTCAT CGCAGCTCGA GGCCAAGGTC
GCCGCCGAAC AACTCGAGGC ACGGCTGCGC AGCACGCGGA TTCACGAAGA GCTGGTGACG
CGGATGAGCC AGGAATCCGA CCTCGCCGAG GGCCTGATCA GGTTTCATCC CAATCTGCTC
GACTTCATTC CGGCGACCGG CGTCGGATTG TGGGTCGACG GTCAATTCAC CGGCCTCGGC
GTCACGCCCG ATGCCGCGCA AACCGAAGCA CTGATCGGCT GGCTGACGGC CACTGCGAAT
GACGGGGTAT TTCAAACCGA CGCCCTGCCG CTGATCTATC CGCCGGCAAA AGCCTTTGCC
GATTGCGCCA GCGGCCTGAT GGCGCTGTCG CTGTCGAAAT CGCCACGCGA CTACGTGCTG
TGGTTCCGGC CCGAAGTGGT GCGCACCGTC ACCTGGGCGG GCAATCCAAA CAAGCCGGTC
GGCGTCGGTC CCGATGGCGG CTTCACGAAC CCGCGCCGCA GCTTCGCCGC ATGGCAGGAA
TCGGTGCGGC TGCATTCCGA GCCGTGGCGC GCCTCCGACA TCGAAGCCGC CCACCGGCTG
AGGCTGTCGC TGCTGGAAGT GGTGCTGCGG CGGATCGACG GCATCGCCCG CGAGCGCAAA
TCGGCGCGGC TGCTGCAGGA GCAACTGATG CGGCAGGTCG AGATCGGCCT GCGCCGGTCG
CAGGACGTCG CCAAGACGCT GCGGGAAGAG ACCCGCCGGC GGGTCTCGGT CGAGGCCGAC
CTGTCGCAGG TGCTGCGCCG GACGGTCGAG GATCAGGAAG CCGAGCGGCT GCGAATCGCG
CGCGAACTGC ATGACACGCT CGGCCAGTCG CTGACGCTGC TGCAGCTCGG CTTCGAGAAT
CTCGGGCAGG TCGCACCCGA CAATGGCGAA TTGCAGCGCC GCATCGCCGG CATCAAGACC
CTCACGGCCG AGATCGGCCA ACAGGTCAAC CGGCTGGCCT GGGAAATCCG GCCGACCGCG
CTCGACGATC TCGGGATCCA GACCGCGGTC CAGCATCTGC TCGACGCATG GAGCGAGAAG
TCGCAAGTGC AGTTCGATCT GCACATGACG CTCGGCGACC GCCGCCTGCC GCCCGCGATC
GAGACCACTC TTTATCGCGT GCTGCAGGAA GCGCTGACCA ACATCGTCCG CCACGCCGCC
GCGAGCCATG TCAGCGTCAT TTTGCGGCTG TCGGATCGGC AGGTGACGAT GGTGGTCGAG
GACGACGGCC GTGGCTTCGT CAATCCCGAC GCCGCCCGCC CGCCGGAGCG GCTCGGCCTG
CTCGGCATTC GTGAGCGGCT GACGCTGGTC GGCGGCTCGC TCGAAATCGA ATCGGCGCCC
GGCAGGGGCA CCGCTTTGTT CGCTCGAATT CCGTTGTAA
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| Protein sequence | MHSGVDNLAE LKFSAIGPTA CDREAIHLAG SIQPHGALLA VTPEDLQIVH AGGETAALLG
VSIESLAGVS AFTIFSGDQI ARLRALLGPD RKIERPLHAF TLKAADATPV DVVVHQASGL
LVLEFEPRRE PAPNNSLALV QSMIRHVQRA GTVQAFCDAV VAEVRAVTGF DRVMIYRFMP
DCSGEVKAES RASGMESFLG LRYPESDIPK QARALYLANW IRAIPDARYA PARIVPMIDP
RTGLPLDLSQ SVIRSVSPAH RLYLAHMGVV ASMSLSIIQH GRLWGLIACH HSSPRYLPYR
MREACELFAE MASSQLEAKV AAEQLEARLR STRIHEELVT RMSQESDLAE GLIRFHPNLL
DFIPATGVGL WVDGQFTGLG VTPDAAQTEA LIGWLTATAN DGVFQTDALP LIYPPAKAFA
DCASGLMALS LSKSPRDYVL WFRPEVVRTV TWAGNPNKPV GVGPDGGFTN PRRSFAAWQE
SVRLHSEPWR ASDIEAAHRL RLSLLEVVLR RIDGIARERK SARLLQEQLM RQVEIGLRRS
QDVAKTLREE TRRRVSVEAD LSQVLRRTVE DQEAERLRIA RELHDTLGQS LTLLQLGFEN
LGQVAPDNGE LQRRIAGIKT LTAEIGQQVN RLAWEIRPTA LDDLGIQTAV QHLLDAWSEK
SQVQFDLHMT LGDRRLPPAI ETTLYRVLQE ALTNIVRHAA ASHVSVILRL SDRQVTMVVE
DDGRGFVNPD AARPPERLGL LGIRERLTLV GGSLEIESAP GRGTALFARI PL
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