| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3769 |
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| Symbol | hemE |
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| ID | 4024285 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 4206123 |
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| End bp | 4207169 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963973 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_570891 |
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| Protein GI | 91978232 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.477463 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0130148 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACACAGA AACTGGTGAC AAAACCTTTC ATTGAGGTCA TTTCCGGAAA ACGGCAAGCC
TCGCCCCCGA TGTGGATGAT GCGACAGGCA GGCCGTTACC TGCCGGAGTA CCGCGCCACC
CGCACCGAAG CCGGAAGCTT CCTCGATCTG TGCTTCAACC CCAAACTCGC CGCCGAGGTG
ACGTTGCAGC CGATCCGGCG CTTCGGTTTC GACGCCGCGA TCATCTTTTC CGACATTCTG
GTGGTGCCGT ACGCGCTCGG GCGCGCGGTC CGCTTCGAGG TCGGCGAGGG TCCGAGGCTC
GATCCGCTGA ACTCGCCGGA CCTGGTCGGC ACGCTCAACG GCGCGATCGA CCTCGGCAAG
CTCGAGCCGG TGTTCGAAGC GCTGCGAATT GTGCGCAGCG AGCTCGCGCC CGAGACGACG
CTGATCGGCT TCTGCGGCGC GCCGTTCACG GTCGCGACCT ACATGGTCGC CGGCCAGGGC
ACGTCGGATC AACATCCGGC GCGGCTGATG GCGTATCAGC ACCCCGGCGC CTTCGCCAAG
ATCATCGATG TTCTGGTCGA GAGTTCGATC CAGTATCTGC TGAAGCAGCT CGAAGCCGGC
GCCGACGTGC TGCAGATCTT CGACACCTGG GGCGGCATCC TGCCGCCGCG CGAATTCGAA
AAGTGGTGCA TCGAGCCGAC CCGCCGCATC GTCGAAGGCG TCCGCAAGGT GAAGCCCGAC
GCCAAGATCA TCGGCTTCCC GCGCGGCGCC GGCGCGCTGC TGCCGGCCTT CATCGAGCGC
ACCGGCGTTG ACGCCGTCAG CATCGACTGG ACGGCGGAGC CGAAGATGGT GCGCGACCAG
GTGCAGACCA AGGTCGCCGT GCAGGGCAAC CTCGACCCGC TTTTGCTGAT CGCCGGCGGC
TCGGCGCTCG ACCAAGGGGT GGACGACGTG CTGAAGAACT TCTCGGCCGG TCGCCACATC
TTCAATCTCG GCCACGGCAT CACGCCGGAC GCCTCGATCG CGCATGTCGA GCAGATGGTG
AAGCGAGTCC GCGCCTTCAG AGGCTGA
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| Protein sequence | MTQKLVTKPF IEVISGKRQA SPPMWMMRQA GRYLPEYRAT RTEAGSFLDL CFNPKLAAEV
TLQPIRRFGF DAAIIFSDIL VVPYALGRAV RFEVGEGPRL DPLNSPDLVG TLNGAIDLGK
LEPVFEALRI VRSELAPETT LIGFCGAPFT VATYMVAGQG TSDQHPARLM AYQHPGAFAK
IIDVLVESSI QYLLKQLEAG ADVLQIFDTW GGILPPREFE KWCIEPTRRI VEGVRKVKPD
AKIIGFPRGA GALLPAFIER TGVDAVSIDW TAEPKMVRDQ VQTKVAVQGN LDPLLLIAGG
SALDQGVDDV LKNFSAGRHI FNLGHGITPD ASIAHVEQMV KRVRAFRG
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