| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3576 |
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| Symbol | |
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| ID | 4024090 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3981850 |
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| End bp | 3982728 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963780 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_570700 |
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| Protein GI | 91978041 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.482512 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCTG CGAGCGAACT GCGATCCGGC AAGACCCACC GGGACGAGAA TTTCCCGGTT
GCGTCGTGGA TCATCCATCC GCGGCATCGC GATCTGATTC TGGCGTTCTA CAATTTCGTC
CGTACCGCCG ACGACATCGC CGACCATGCG ATGCTCGATG CCCCGACCAA GCTGAGCTAC
CTCGATCTGC TCGAGGCCGA ATTGCTCGGC CGCGGCGAAA CCCAGCCCGA GGCGGTCAAT
CTCCGCCGCG CGCTGGCGGA GCGCGGGATG CCGCCGCGCC ACGCCCTCGA CGTGCTGATC
GCGTTCCGGA TGGACGTCAC CAAGCTGCGC TACGAGGACT GGGACGAGGT GATCCACTAT
TGCCGCTATT CGGCGATGCC GGTGGGTCGC TTCATGCTCG ACGTCCATGG CGAGAGCACC
TCGACCTGGC CGGCGTCCGA CGCGCTGTGC GCCGGGCTGC AGGTCAACAA TCACCTGCAG
GATTGCGGCA AGGACTATCG CAATCTCAAC CGCGTCTACC TGCCGCGCGA TGCGCTGGAC
GCGGTCGGCG CCCAGGTCGA GGAACTCGGC CAGTTGAAAT CCTCGCCGGC GCTGCTGCAC
TGCCTGCAGA GCCTCGCCGC GCGCACCGAC GTGCTGCTCG GCGAAGGCCG TCCGCTCGCG
GCCGAGGTCA AGGATTTCCG GCTCGGCCTC GAAGTCTCGG TGATCCAGGC GTTTGCCGAT
CGCATCGTCC GGATGCTCAA GGTGCGCGAT CCGCTCAGCG AGCGCGTGCA TCTGAAGCCG
ATCGAGTTTC TGTTCTCCAC GATCGGCGCG GTCGGATCCG AGATCACCCG CCGCACCTTC
CGAAAGGGAC CGGTGTCGAA CCCGGCGCCG CGCGCATGA
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| Protein sequence | MTSASELRSG KTHRDENFPV ASWIIHPRHR DLILAFYNFV RTADDIADHA MLDAPTKLSY
LDLLEAELLG RGETQPEAVN LRRALAERGM PPRHALDVLI AFRMDVTKLR YEDWDEVIHY
CRYSAMPVGR FMLDVHGEST STWPASDALC AGLQVNNHLQ DCGKDYRNLN RVYLPRDALD
AVGAQVEELG QLKSSPALLH CLQSLAARTD VLLGEGRPLA AEVKDFRLGL EVSVIQAFAD
RIVRMLKVRD PLSERVHLKP IEFLFSTIGA VGSEITRRTF RKGPVSNPAP RA
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