| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3508 |
|---|
| Symbol | |
|---|
| ID | 4024022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3896121 |
|---|
| End bp | 3897314 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637963712 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_570632 |
|---|
| Protein GI | 91977973 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0288069 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCGC ACATCCTCAC CCGCTCGCTC GATCGCAGCG CGACGATCTT CCTGCTGGTG
CTCGCCGCGC TCGGCATTCT GCTGCCGCTG TCGAACCTGC TGCTTCCCGA AAGCTCGTTC
CTGCACGTGC CGACCTATCT GATCTCGCTG TTCGGCAAAT ATGTCTGCTA CGCCATCCTC
GCACTCTCGA TCGACTTGAT CTGGGGCTAT TGCGGCATTC TCTCGCTCGG CCACGGCGCG
TTCTTCGCGC TCGGCGGATA CGCGATGGGG ATGTATCTGA TGCGCCAGAT CGGGGATCGC
GGCGTCTATG CCAATCCGGT GCTTCCGGAT TTCATGGTGT TCCTGAACTA CAAGGAATTG
CCGTGGTACT GGACCGGATT CGACATGTTC TGGTTCGCGG CGCTGATGGT GCTGGTGGTG
CCGGGCCTGC TCGCCTTCTG CTTCGGCTGG CTGGCGTTCC GCTCGCGCGT CACCGGGGTG
TATCTGTCGA TCATCACCCA GGCGATGACC TACGCGCTGC TGCTGGCGTT CTTCCGCAAC
GATTTCGGGT TCGGCGGCAA CAACGGTCTG ACCGACTTCA AGGACATTCT CGGTTTCAAC
ATCCAGGCCG ACGGCACCCG CGCCGCGCTG TTCGTGCTGA GCTGTCTGGC GCTGGCGATC
GGCTTCCTGA TCTGCCGCGC GGTGGTGACC TCCAAGCTCG GCAAGGTGCT GATCGCGATC
CGCGACGCCG AGAGCCGCAC CCGGTTCCTC GGCTACCGCG TCGAGACCTA TAAATTGTTC
GTGTTCACGC TGTCGGCCTG CATGGCCGGC GTCGCCGGCG CGCTGTACGT GCCGCAAGTG
GGCATCATCA ATCCCGGCGA ATTCGCTCCG GCGAATTCGA TCGAGGCGGT GATCTGGGTC
GCGGTCGGCG GTCGCGGCAC GCTGGTCGGC GCAGCACTCG GCGCCGTCGT CGTCAACTAC
GCCAAGACCG TGTTCACCTC CGGGCCGCTG GCGCCGTATT GGCTGTTCAT GCTCGGCGCG
TTGTTCGTGC TGGTGACGCT GCTGCTGCCG AAGGGCATCA TCGGCACCTT CAACGCCTGG
TGGGAGGGCC GCAAGGAGAG AGGACAAGCG CAGCGCGACA GCGCGATCGC CGCCGCGGCC
GAAAGCGCCG CGCGCGAGGA CGGCGTGATC GAACCGACCA TGGTGAAGCG ATGA
|
|---|
| Protein sequence | MTPHILTRSL DRSATIFLLV LAALGILLPL SNLLLPESSF LHVPTYLISL FGKYVCYAIL
ALSIDLIWGY CGILSLGHGA FFALGGYAMG MYLMRQIGDR GVYANPVLPD FMVFLNYKEL
PWYWTGFDMF WFAALMVLVV PGLLAFCFGW LAFRSRVTGV YLSIITQAMT YALLLAFFRN
DFGFGGNNGL TDFKDILGFN IQADGTRAAL FVLSCLALAI GFLICRAVVT SKLGKVLIAI
RDAESRTRFL GYRVETYKLF VFTLSACMAG VAGALYVPQV GIINPGEFAP ANSIEAVIWV
AVGGRGTLVG AALGAVVVNY AKTVFTSGPL APYWLFMLGA LFVLVTLLLP KGIIGTFNAW
WEGRKERGQA QRDSAIAAAA ESAAREDGVI EPTMVKR
|
|---|
| |