Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3407 |
Symbol | |
ID | 4023920 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3789603 |
End bp | 3790259 |
Gene Length | 657 bp |
Protein Length | 218 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637963612 |
Product | TetR family transcriptional regulator |
Protein accession | YP_570532 |
Protein GI | 91977873 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0155576 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.84746 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTTGAAA CCCAGGCCGC CACCTCCGTT CAAGGCCACG ATGAGGACTG CGCCAAGCGC CGTCAGATCA TCAAGGGCGC GCGCACGGTG TTCCTCGAAC AGGGCTTCGA CGGCGCCAGC ATGGGCGAGA TCGCACGCGC CGCGGGAGTC TCCAAAGGGA CGCTCTACGT CTACTTCACC GACAAGAATT CGCTGTTCTG CGAGATCATC GAACAAGAGA GCATCGCCCA GGGCATGCTG TCGTTCGACT TCATGCCGGA GCGCGACATC GAAACCACGC TCAAAGTGTT CGGCACAGCC TACATCAAGT TGCTGTGCAA CCCGCGCGGG GCATCGGCGA TCCGCACGGT GATGGCGATC GCCGAACGGA TGCCGGACAT CGGCCAACGC TACTACGAGC GAGTGATCGC AAACTCACTC GGCCGTTTCG CGCGCTATCT CGACCAGCAG GTGAAATCCG GCACGCTGGT CATCGACAAT TGCGACCTCG CCGCGGCCCA GTTCACCAAA TTGTGCCAGG CGACGCTGTT TCTGCCGTTC ATTTTTCAGA TGACGGAAAC GCCCTCCTCC GAGCGCATCG CCGAGGTGGT GGACAGCGCC ACCCGAATGT TCCTCGCCGC CTATCGCGCC AAGCCGAACG ACGGCAGGCC GAGCTGA
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Protein sequence | MVETQAATSV QGHDEDCAKR RQIIKGARTV FLEQGFDGAS MGEIARAAGV SKGTLYVYFT DKNSLFCEII EQESIAQGML SFDFMPERDI ETTLKVFGTA YIKLLCNPRG ASAIRTVMAI AERMPDIGQR YYERVIANSL GRFARYLDQQ VKSGTLVIDN CDLAAAQFTK LCQATLFLPF IFQMTETPSS ERIAEVVDSA TRMFLAAYRA KPNDGRPS
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