Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3406 |
Symbol | |
ID | 4023919 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | - |
Start bp | 3788171 |
End bp | 3789430 |
Gene Length | 1260 bp |
Protein Length | 419 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637963611 |
Product | secretion protein HlyD |
Protein accession | YP_570531 |
Protein GI | 91977872 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0814588 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGGAC GCGATCAGGC TGCCCGAGTT CGTCGCGCCG GGCCGGACAG CGCGCCGGCC GAATCCGGCG CCGATGTCCC GCAGCCGCAA GCCCCGTCGC AGGCGGAGAC GCTGCGCTCG TTGCTGGAGG ATCCCGCGAC GCTGAAGCTC GCCGATCCGC CGGAGCCGGA GCTGGACGAC GAGGCGGTCG CGCCGGTTGC GAAGCCCGCG GCGGCAGCAA GGAAGCCCGG CAAGAAAAGG CTGGTCCTGA TCGGCGTCGG CATCGCGGCG CTGGCCGCGG CCGCGTATTA CGGCATCGAT TACATGCTGG TCGGCCGCTT CATGGTGTCG ACCGACGACG CCTATGTGCG GGCCAACAAC ACCACGCTCG GCGCCCGCGT CGCCGGCCAT GTCGCCGCCA TCCTGCCGCG TGACAACGCC GTCGTCAAAG CGGGCGACGT GGTGTTCAAG ATCGATGACG GCGACTACAA GATCGCGGTC GACGCCGCCC GCGCCAAGAT CGCCACCCAG CAGGCGACGA TCGAACGGAT CGGCCGGCAA GTCTCCGCGC TGCAGAGCGC CGTCGAGCAG GCGCAAGCGC AGCGCGACTC CGCCGAGGCC GCGGCCAAGC GCGCTGCGCT CGATTTCGAT CGCCAGCAGG CGCTCAGCAC CAAGGGGTTC GCCTCGCGCG CAACCTTCGA GGTGTCTCAA GCCGGCCGCG ACCAGGGCGT CGCCTCGGTG GCCGCCGCCA AGGCCGCGTT CGATGCCGCG CGTGACAATG TCGAGGTCAC CAAGGCGCAG CAAAACGAAG CGCGCGCCCA GCTCGTCGAG CTGCAGAGCT CGCTCGCCAA GGCCGAGCGC GATCTCGACT TCACCAATGT CCGTGCGCCG GTCGAGGGCG TGTTCTCCAA CCGGCTCGTC AATACGGGCG ACTTCATCCA GGCCGGCCAG CGGCTCGCCA ACATCGTGCC GCTCGACGGG GTCTATGTCG ACGCCAACTT CAAGGAAACC CAACTCGGCC GGCTGAAGCC CGGCCAGAAG GTCGACATTT CGGTCGACGC TTACTCCAGC CGCAAGATCG AGGGCACGGT CGACAGCCTG GCGCCCGCGG CCGGTCAGGT GTTCACGCTG CTGCCGCCCG ATAACGCCAC CGGCAACTTC ACCAAGATCG TGCAGCGCGT GCCGGTGCGG ATCCGCGTCC CGGCCGAGGT GGCGCGCGAG AATCTGCTGC GCGCCGGCAT GTCGGTCTAC GTCCGCGTCG ACACCAAGCC GGCGAACTGA
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Protein sequence | MSGRDQAARV RRAGPDSAPA ESGADVPQPQ APSQAETLRS LLEDPATLKL ADPPEPELDD EAVAPVAKPA AAARKPGKKR LVLIGVGIAA LAAAAYYGID YMLVGRFMVS TDDAYVRANN TTLGARVAGH VAAILPRDNA VVKAGDVVFK IDDGDYKIAV DAARAKIATQ QATIERIGRQ VSALQSAVEQ AQAQRDSAEA AAKRAALDFD RQQALSTKGF ASRATFEVSQ AGRDQGVASV AAAKAAFDAA RDNVEVTKAQ QNEARAQLVE LQSSLAKAER DLDFTNVRAP VEGVFSNRLV NTGDFIQAGQ RLANIVPLDG VYVDANFKET QLGRLKPGQK VDISVDAYSS RKIEGTVDSL APAAGQVFTL LPPDNATGNF TKIVQRVPVR IRVPAEVARE NLLRAGMSVY VRVDTKPAN
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