| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3381 |
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| Symbol | |
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| ID | 4023893 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3753592 |
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| End bp | 3755736 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637963586 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_570506 |
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| Protein GI | 91977847 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0113379 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.00670333 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCTCAA AGTCGAAGAC TGCCGCCCCC GACATCGACA AGCTCACCAA GCCAAAGGCG
AAGGTGGAGC TGATGCGTTT GCGGCTGGCG ATCGAAGGGC ACGACAAAGC GTACTATCAG
GACGACGCGC CGAAAATTCC GGACGCCGAC TACGACGCGT TGCGGCGTAG GCTGGAGGCG
ATCGAGGCGA AATTTCCCGA ACTGCTCAGC GCATCCTCGC CGAGCCAGAC GGTCGGCGCG
GCGCCGGCGC GCGGCTTTTC CAAGGTGCAG CACGCGGTGC CGATGCTGTC GCTCGGCAAC
GCGTTTTCGG ACGATGAGGT CGGGGAGTTC GTCGAGCGCG TGCAGCGCTT CCTCAAGCTC
GAGGACATTC CGGCGATCGT CGCCGAGCCG AAGATCGACG GGCTGTCGCT GTCGCTGCGC
TACGAGAATG GAACGCTGGT GCGCGCGGCG ACGCGCGGCG ACGGCTTCAC CGGCGAGGAC
GTCACCGCCA ACGTCCGCAC CATCGCGGAC ATTCCGACCA CGCTGAAGGC GAAGACAATC
CCCGCCGCCT GCGAGCTGCG CGGCGAAGTC TACATGCTGA AGCACGACTT CCTCGCGCTC
AACAAGCGGC AGGAAGAGGC CGGCGACACC GTGTTCGCCA ATCCGCGCAA CTCCGCCGCC
GGGTCGCTGC GGCAGAAGGA TGTCGCGATC ACGGCGTCGC GGCCGCTGAA GTTCTTCGCC
TATGCCTGGG GCGAGATGAG CGACTACCCG ATGGAATCGC CGACCCAACA CGCCATGCTG
GCTTGGCTTG GAGACGCAGG TTTCACGGTC AATCCCGAGA TCACGCTGTG TCACAGCGTC
GACGATGCGC TGGCGTTCTA TCGCCGGATC GGCGAGCAGC GCGCGGCGCT GCCCTATGAC
ATCGACGGCG TCGTCTACAA GGTCGACCGG CTCGACTATC AGGCGCGGCT CGGATTCGTG
TCGCGTAGTC CGCGCTGGGC GATCGCGCAT AAATTCGCCG CCGAGCAGGC GGTGACGGTG
CTGGAGAAGA TCGACATCCA GGTCGGCCGC ACCGGCGCGC TGACTCCGGT GGCGCGGCTG
CAGCCGGTCA CCGTCGGCGG CGTGGTGGTG CAGAACGCCA CGCTGCATAA CGAGGACTAC
ATCAAGGGCG TCGGCAGCGA CGGGTCTCCG TTGCGCGACG GCGTCGATAT CCGCGAGGGC
GACACCGTCG TCGTGCAACG CGCCGGCGAC GTGATTCCGC AGATCGTCAC TGTCGTGCTC
GACAAGCGGC CGGCGGATTT GCCCGCGTAC AAATTCCCTC ACAAATGCCC GGTCTGCGGC
AGTCATGCCG CGCGCGAGGA GGGCGAGGCG GTGTGGCGCT GCACCGGCGC GCTGATCTGC
CCGGCGCAGG CGGTGGAGCG GCTGAAGCAT TTCGTCTCAC GGCTCGCCTT CGATATCGAT
GGGCTCGGCG AGAAACAGAT CGTGCTGTTT CACGAGCGCG GCTGGGTCAG GGAGCCGGCC
GACATCTTTA CGCTGAAGGC GCGCAACGCT GAGCTGAAGC TCGAAGACCT CGAAGGCTAC
GGCGAGACCT CGGTGCGCAA TCTGTTCGCG GCGATCGACG CACGGCGCAA CATCGAACTG
AACCGCCTGA TCTTCGCGCT CGGCATCCGC CACGTCGGCG AGGGCAACGC CAAGCTGCTG
GCGCGGCACT ATGGCTCGAT CGATGTGTTC CTCGCCGCGA TGCGCGCCGC CGCGGAAGGC
CAGACGCCAG AGGGCAATAC GTCGGAAGCC TATCAGGACC TCGACAACAT CGCCGGGATC
GGCGACGTCG TCGCCGAGGC CGTGGTCGAG TTCTTCGCCG AGCCGCGCAA TGTCGGGGCG
CTCGACGCCT TGCTAAGGGA GATCGAGGTG CTGCCGGTCG AACAGGCCAA GCAGGACACT
GCCGTCGCCG GCAAGACTGT GGTGTTCACT GGTGCGCTCA CGAAATTCAC CCGCGACGAG
GCCAAGGCGG CGGCTGAGCG GCTGGGTGCG AAGGTCGCCG GCTCGGTGTC GAAGAAGACC
GACTACGTCG TCGCCGGCGA AGACGCCGGC TCCAAGCTGA CCAAGGCGCG CGACCTCGGC
GTCGCGGTGC TGACCGAAGA CGAGTGGCTG GCGCTGATCG GGTGA
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| Protein sequence | MISKSKTAAP DIDKLTKPKA KVELMRLRLA IEGHDKAYYQ DDAPKIPDAD YDALRRRLEA
IEAKFPELLS ASSPSQTVGA APARGFSKVQ HAVPMLSLGN AFSDDEVGEF VERVQRFLKL
EDIPAIVAEP KIDGLSLSLR YENGTLVRAA TRGDGFTGED VTANVRTIAD IPTTLKAKTI
PAACELRGEV YMLKHDFLAL NKRQEEAGDT VFANPRNSAA GSLRQKDVAI TASRPLKFFA
YAWGEMSDYP MESPTQHAML AWLGDAGFTV NPEITLCHSV DDALAFYRRI GEQRAALPYD
IDGVVYKVDR LDYQARLGFV SRSPRWAIAH KFAAEQAVTV LEKIDIQVGR TGALTPVARL
QPVTVGGVVV QNATLHNEDY IKGVGSDGSP LRDGVDIREG DTVVVQRAGD VIPQIVTVVL
DKRPADLPAY KFPHKCPVCG SHAAREEGEA VWRCTGALIC PAQAVERLKH FVSRLAFDID
GLGEKQIVLF HERGWVREPA DIFTLKARNA ELKLEDLEGY GETSVRNLFA AIDARRNIEL
NRLIFALGIR HVGEGNAKLL ARHYGSIDVF LAAMRAAAEG QTPEGNTSEA YQDLDNIAGI
GDVVAEAVVE FFAEPRNVGA LDALLREIEV LPVEQAKQDT AVAGKTVVFT GALTKFTRDE
AKAAAERLGA KVAGSVSKKT DYVVAGEDAG SKLTKARDLG VAVLTEDEWL ALIG
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