Gene RPD_3375 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3375 
Symbol 
ID4023887 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3745433 
End bp3747043 
Gene Length1611 bp 
Protein Length536 aa 
Translation table11 
GC content67% 
IMG OID637963580 
ProductFAD dependent oxidoreductase 
Protein accessionYP_570500 
Protein GI91977841 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0710471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0059341 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCGATC CCGACGTGCT GATCATCGGC GCCGGCCATA ACGGCCTCAC CTGCGCCGCC 
TATCTGGCGC AGGCCGGGCT CAAGGTGAAG GTGGCCGAGC GCCGCAGCGT GGTCGGCGGC
GCAGCGGTGA CGCAGGAGTT TCATCCTGGC TTTCGCAACT CGGTTGCGGC CTATACGGTC
AGCCTGCTCA ACCCTCAGGT GATCGCCGAT CTCCGGTTGC ACCAGCACGG GCTGCGCATC
GTCGAGCGCC GAGCGCAGAA CTTCCTGCCT GCGCCGGGCG GCAAATATCT GCTGACGGGC
TCGAAATACA CCGCGAAATC GGTGGCGCAT CTGAGCCGCC ACGACGCCGG CAAAATCGAC
GGCTTCACCG CCGAACTGGA AACGATCGCC GACGTGCTGC GGCATTTCGT GCTGCGCGCG
CCGCCCAATC TGGTCGAGCG TTTCGGCGTC GGCGCGATCC GCGAAGGCGT CGCGGCGCTG
GGAACAGCCA ACCGCCTGCG CGCGCTGTCG CTGGAACAGC AACGGCTGCT GCTCGACCTT
TTCACCTGTT CGGCCGGCGA GATGCTCGAC GCGCGGTTCG AGAACGATCT GGTCAAGGCG
CTGTTTGGCT TCGACGCGAT CGTCGGCAAT TACGCAAGCC CCTACGCCGC CGGTTCCGCC
TATGTGATGT TGCATCACGC CTTCGGTGAA GTGAACGGCA AGAAGGGCGT CTGGGGCCAC
GCAATCGGCG GCATGGGCGC GATCACCCAG GCGATGGCGG CTGCGGCCCG CGCCGCGGGG
GCCGAGATCG AAACCAGCGC CGGCGTGCGC GAGGTGCTGG TCGAGCGCGG GCGCGTCGTC
GGCGTCACCC TAGACGACGG CCGCAGCCTG CGCGCCAAAT ACGTCGCCGC TAACGTCAAT
CCGAAACTGC TCTACACCCG GCTGCTACCG AAGGACGCGC TGCCGGTCGA TTTCCTCCGC
CGCATGCAGG CGTGGAAGAA CGGCTCCGGC ACTTTCCGGA TGAATGTTGC GCTATCCGGC
CTGCCCTCGT TCGAGGCGCT GCCCGGTTCG GGCGACCACC TCACCGCCGG CATCATTATC
GCCCCGAGCG TCGACTACAT GGACCGGGCT TACATCGACG CCCGTCAGCA CGGCTGGAGC
CGCGAACCGG TGGTCGAAAT GCTGATCCCC TCGACGCTGG ACGACTCGCT GGCGCCACCC
GGCCGGCACG TCGCCAGCCT GTTCTGCCAG CACGTCGCGC CGCAATTGCC CGACGGCGTC
TCCTGGGATG ATCGCCGCGA GGAGGTCGCC GATTTGATGA TCGCGACCGT CGATCGCTAC
GCCCCCGGCT TTGCCGCCAG CGTGCTCGGC CGACAGATCC TGTCGCCGCT CGATCTCGAG
CGCGACTTCG GCCTGCTCGG CGGCGACATT TTCCACGGCG CGCTGAGCCT GAACCAGCTG
TTCTCCGCCC GCCCGATGCT CGGCCATGCC GACTATCGCG GCCCGCTGAA AGGGCTCTAT
CACTGCGGCT CCGGCGCCCA TCCCGGCGGC GGCGTCACCG GCGCGCCCGG CCACAACGCC
GCGGCAACGA TCCTCAAAGA CCACCGCAGC CTGTTCAAAG CGCGTGGATA A
 
Protein sequence
MSDPDVLIIG AGHNGLTCAA YLAQAGLKVK VAERRSVVGG AAVTQEFHPG FRNSVAAYTV 
SLLNPQVIAD LRLHQHGLRI VERRAQNFLP APGGKYLLTG SKYTAKSVAH LSRHDAGKID
GFTAELETIA DVLRHFVLRA PPNLVERFGV GAIREGVAAL GTANRLRALS LEQQRLLLDL
FTCSAGEMLD ARFENDLVKA LFGFDAIVGN YASPYAAGSA YVMLHHAFGE VNGKKGVWGH
AIGGMGAITQ AMAAAARAAG AEIETSAGVR EVLVERGRVV GVTLDDGRSL RAKYVAANVN
PKLLYTRLLP KDALPVDFLR RMQAWKNGSG TFRMNVALSG LPSFEALPGS GDHLTAGIII
APSVDYMDRA YIDARQHGWS REPVVEMLIP STLDDSLAPP GRHVASLFCQ HVAPQLPDGV
SWDDRREEVA DLMIATVDRY APGFAASVLG RQILSPLDLE RDFGLLGGDI FHGALSLNQL
FSARPMLGHA DYRGPLKGLY HCGSGAHPGG GVTGAPGHNA AATILKDHRS LFKARG