Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_3375 |
Symbol | |
ID | 4023887 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3745433 |
End bp | 3747043 |
Gene Length | 1611 bp |
Protein Length | 536 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637963580 |
Product | FAD dependent oxidoreductase |
Protein accession | YP_570500 |
Protein GI | 91977841 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0710471 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0059341 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCCGATC CCGACGTGCT GATCATCGGC GCCGGCCATA ACGGCCTCAC CTGCGCCGCC TATCTGGCGC AGGCCGGGCT CAAGGTGAAG GTGGCCGAGC GCCGCAGCGT GGTCGGCGGC GCAGCGGTGA CGCAGGAGTT TCATCCTGGC TTTCGCAACT CGGTTGCGGC CTATACGGTC AGCCTGCTCA ACCCTCAGGT GATCGCCGAT CTCCGGTTGC ACCAGCACGG GCTGCGCATC GTCGAGCGCC GAGCGCAGAA CTTCCTGCCT GCGCCGGGCG GCAAATATCT GCTGACGGGC TCGAAATACA CCGCGAAATC GGTGGCGCAT CTGAGCCGCC ACGACGCCGG CAAAATCGAC GGCTTCACCG CCGAACTGGA AACGATCGCC GACGTGCTGC GGCATTTCGT GCTGCGCGCG CCGCCCAATC TGGTCGAGCG TTTCGGCGTC GGCGCGATCC GCGAAGGCGT CGCGGCGCTG GGAACAGCCA ACCGCCTGCG CGCGCTGTCG CTGGAACAGC AACGGCTGCT GCTCGACCTT TTCACCTGTT CGGCCGGCGA GATGCTCGAC GCGCGGTTCG AGAACGATCT GGTCAAGGCG CTGTTTGGCT TCGACGCGAT CGTCGGCAAT TACGCAAGCC CCTACGCCGC CGGTTCCGCC TATGTGATGT TGCATCACGC CTTCGGTGAA GTGAACGGCA AGAAGGGCGT CTGGGGCCAC GCAATCGGCG GCATGGGCGC GATCACCCAG GCGATGGCGG CTGCGGCCCG CGCCGCGGGG GCCGAGATCG AAACCAGCGC CGGCGTGCGC GAGGTGCTGG TCGAGCGCGG GCGCGTCGTC GGCGTCACCC TAGACGACGG CCGCAGCCTG CGCGCCAAAT ACGTCGCCGC TAACGTCAAT CCGAAACTGC TCTACACCCG GCTGCTACCG AAGGACGCGC TGCCGGTCGA TTTCCTCCGC CGCATGCAGG CGTGGAAGAA CGGCTCCGGC ACTTTCCGGA TGAATGTTGC GCTATCCGGC CTGCCCTCGT TCGAGGCGCT GCCCGGTTCG GGCGACCACC TCACCGCCGG CATCATTATC GCCCCGAGCG TCGACTACAT GGACCGGGCT TACATCGACG CCCGTCAGCA CGGCTGGAGC CGCGAACCGG TGGTCGAAAT GCTGATCCCC TCGACGCTGG ACGACTCGCT GGCGCCACCC GGCCGGCACG TCGCCAGCCT GTTCTGCCAG CACGTCGCGC CGCAATTGCC CGACGGCGTC TCCTGGGATG ATCGCCGCGA GGAGGTCGCC GATTTGATGA TCGCGACCGT CGATCGCTAC GCCCCCGGCT TTGCCGCCAG CGTGCTCGGC CGACAGATCC TGTCGCCGCT CGATCTCGAG CGCGACTTCG GCCTGCTCGG CGGCGACATT TTCCACGGCG CGCTGAGCCT GAACCAGCTG TTCTCCGCCC GCCCGATGCT CGGCCATGCC GACTATCGCG GCCCGCTGAA AGGGCTCTAT CACTGCGGCT CCGGCGCCCA TCCCGGCGGC GGCGTCACCG GCGCGCCCGG CCACAACGCC GCGGCAACGA TCCTCAAAGA CCACCGCAGC CTGTTCAAAG CGCGTGGATA A
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Protein sequence | MSDPDVLIIG AGHNGLTCAA YLAQAGLKVK VAERRSVVGG AAVTQEFHPG FRNSVAAYTV SLLNPQVIAD LRLHQHGLRI VERRAQNFLP APGGKYLLTG SKYTAKSVAH LSRHDAGKID GFTAELETIA DVLRHFVLRA PPNLVERFGV GAIREGVAAL GTANRLRALS LEQQRLLLDL FTCSAGEMLD ARFENDLVKA LFGFDAIVGN YASPYAAGSA YVMLHHAFGE VNGKKGVWGH AIGGMGAITQ AMAAAARAAG AEIETSAGVR EVLVERGRVV GVTLDDGRSL RAKYVAANVN PKLLYTRLLP KDALPVDFLR RMQAWKNGSG TFRMNVALSG LPSFEALPGS GDHLTAGIII APSVDYMDRA YIDARQHGWS REPVVEMLIP STLDDSLAPP GRHVASLFCQ HVAPQLPDGV SWDDRREEVA DLMIATVDRY APGFAASVLG RQILSPLDLE RDFGLLGGDI FHGALSLNQL FSARPMLGHA DYRGPLKGLY HCGSGAHPGG GVTGAPGHNA AATILKDHRS LFKARG
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