| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3367 |
|---|
| Symbol | |
|---|
| ID | 4023879 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 3733693 |
|---|
| End bp | 3736236 |
|---|
| Gene Length | 2544 bp |
|---|
| Protein Length | 847 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637963572 |
|---|
| Product | UvrD/REP helicase |
|---|
| Protein accession | YP_570492 |
|---|
| Protein GI | 91977833 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.00561637 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACTGAAC CGAACAAGCG CGCCAATCTC GACCTTTCCG GCTATCAGCC CGCTGCCGGC
GGCATCGCCG CGCGGGCGCG CGCGTCCGCG GCGCCCGCCT ATTTGTCGGG ACTCAATCCG
GAGCAGCGCG AGGCGGTCGA GTCGCTCGAC GGCCCGGTGC TGGTGCTCGC CGGCGCCGGC
ACCGGCAAGA CGCGGGTGCT GACCACGCGG ATCGCGCACA TCCTCTCCAC CGGCCGGGCG
CGCCCCGCCG AGATCCTGTC GGTGACCTTC ACCAACAAGG CCGCGCGCGA GATGAAGCTG
CGGCTCGGCC AGATGCTCGG CCAGGCGGTC GAGGGCATGC CGTGGCTCGG CACCTTCCAT
TCGATCGGCG GGCGAATCCT GCGCTATCAC GCCGAGCTGG TGCAGCTCAC CTCGAACTTC
ACCGTGCTCG ACACCGACGA CCAGATCCGG CTGCTGAAGC AATTGCTCGC CGCCGACAAT
ATCGACGACA AGCGCTGGCC GGCGCGGATG CTGGCCGGCC TGATCGACGG CTGGAAGAAC
CGCGGGCTGA CGCCGTCGCA GGTGCCCGCC GGCGAAGCCG CGAGCTTCGG CAACGGCCGC
GGCGGCAAGC TCTACGCCGC CTATCAGGAA CGGCTGAAAG TTCTCAACGC TGCGGATTTC
GGCGACCTGC TGCTGGAGAA CATCCGGCTG TTCCGCGAGC ACCCCGACGT GCTGCGGCAG
TATCAGGGCC GCTTCAAATT CATCCTGGTC GACGAGTATC AGGACACGAA CGTCGCGCAG
TATTTGTGGC TGCGGCTGCT GTCGCAGGCG CCATCACAAT CGTCATTGCC GGGCTCGACC
CGGCAATCCA TCACATCTCG AGAAGATGGA TCACCGGGTC TCGACGCTTC GCGTCGGCCC
GGTGATGACG ATAAAGCAAG CGGCGGCGTC CAAACCGCAG CCCCCAAAAA CATCTGCTGC
GTCGGCGACG ATGATCAGTC GATCTATGGC TGGCGCGGCG CCGAGGTCGA CAACATCCTG
CGCTTCGACC ACGACTTCCC CGGCGCCAAG GTGATCCGGC TCGAACGCAA CTATCGCTCG
ACCGGCCACA TCCTAGCCGC CGCCTCGCAT CTGATCGCGC ACAACGAGGG GCGGCTCGGC
AAGACGCTGC GCACCGAGGA CGTCGACGGC GAGATGGTCA CCGTCACCGG CGCATGGGAC
TCCGAAGAAG AAGCTCGCGG CATCGGCGAG GAGATCGAGC AGCTGCAGCG CCAGGGCCAC
AAGCTCAACG AAATCGCCAT TCTGGTGCGC GCCTCGTTCC AGATGCGCGA ATTCGAAGAC
CGCTTCGTGA CGCTCGGCCT GCCCTACCGC GTGATCGGCG GACCGCGCTT CTACGAGCGC
GCCGAAATCC GCGATGCGCT GGCTTATCTG CGCGTGATCA ATTCGCCCGC CGACGACCTC
GCCTTCGAGC GCATCGTCAA TGTGCCGAAG CGCGGCCTCG GCGACGCCAC CGTGCAGATG
CTGCACGACC ACGCCCGCAA GCGGAAGATG CCGCTGTTCG AGGCGGCGCG GCTGGTGATC
GACACCGACG AGATGAAGCC CAAAGCGCGG AGTTCGCTGC GCGGCCTGAT CGAGAATTTC
GAGCGCTGGC AGGTGCAGCG CAATGCGCTG TCGCATACCG AACTCGCCGA GATCGTGCTC
GACGAGAGCG GCTACACCGA GATGTGGCAG AAGGACCGCT CCGCCGATGC CGCCGGCCGG
CTCGAAAACC TCAAAGAACT CGTTCGCTCG ATGGAAGAGT TCGAGAACCT GCAAGGTTTC
CTCGAACACA TCTCGCTGGT GATGGACCGC GACGGCGCCG CCGACGAGGA TGCGGTCAGC
GTGATGACGC TGCACTCCGC CAAGGGGCTG GAGTTCGAGA CCGTGTTCCT GCCCGGCTGG
GAGGAAGGCC TGTTTCCGCA TCAGCGCGCG CTCGACGATC AGGGCCGCGC CGGGCTGGAA
GAGGAACGCC GTCTCGCCCA TGTCGGCATT ACGCGCGCGA GACGCCGAGC GAAATTGTAC
TTCGCCACCA ACCGCCGGAT TCACGGCACC TGGAACACCA CGATCCCGTC GCGTTTCCTC
GACGAACTGC CGCAGGCCAA TGTCGAGATC ACCGAGTCGA AAGGCGGGTC CGGCTGGGGC
GGCATGAGCG GCTACGGCCC GTCGCGCTTC GACAATGTCG AGTCGTTCGG CTCGAGCTAT
TCCACCCCGG GCTGGCAGCG CGCCCAAGCG CAACGCGGCA AGAACGGCGG CAGCCGCAGC
GGCGGTGGCG GCTTCAGCGA GAGTAGCTCG CCGTTCTCAG ACCGCGGCGC ATCCCCGGGC
GCCCGCCGGG CCCCGTTCAC GATCGAGGGC GAGCTGGTGG CGAAATCCAC CGGCGCCGAA
TCCGACTTCA CGCTGAGCGA TCGCGTCTTC CATCAGAAAT TCGGCTACGG CCAGGTGACG
AAAATCGACG GCAACAAACT CACCATCGCC TTCGACAAGG CCGGCGAGAA GAAGGTGGTC
GATAGTTTCG TGCAGCGGGT GTAG
|
|---|
| Protein sequence | MTEPNKRANL DLSGYQPAAG GIAARARASA APAYLSGLNP EQREAVESLD GPVLVLAGAG
TGKTRVLTTR IAHILSTGRA RPAEILSVTF TNKAAREMKL RLGQMLGQAV EGMPWLGTFH
SIGGRILRYH AELVQLTSNF TVLDTDDQIR LLKQLLAADN IDDKRWPARM LAGLIDGWKN
RGLTPSQVPA GEAASFGNGR GGKLYAAYQE RLKVLNAADF GDLLLENIRL FREHPDVLRQ
YQGRFKFILV DEYQDTNVAQ YLWLRLLSQA PSQSSLPGST RQSITSREDG SPGLDASRRP
GDDDKASGGV QTAAPKNICC VGDDDQSIYG WRGAEVDNIL RFDHDFPGAK VIRLERNYRS
TGHILAAASH LIAHNEGRLG KTLRTEDVDG EMVTVTGAWD SEEEARGIGE EIEQLQRQGH
KLNEIAILVR ASFQMREFED RFVTLGLPYR VIGGPRFYER AEIRDALAYL RVINSPADDL
AFERIVNVPK RGLGDATVQM LHDHARKRKM PLFEAARLVI DTDEMKPKAR SSLRGLIENF
ERWQVQRNAL SHTELAEIVL DESGYTEMWQ KDRSADAAGR LENLKELVRS MEEFENLQGF
LEHISLVMDR DGAADEDAVS VMTLHSAKGL EFETVFLPGW EEGLFPHQRA LDDQGRAGLE
EERRLAHVGI TRARRRAKLY FATNRRIHGT WNTTIPSRFL DELPQANVEI TESKGGSGWG
GMSGYGPSRF DNVESFGSSY STPGWQRAQA QRGKNGGSRS GGGGFSESSS PFSDRGASPG
ARRAPFTIEG ELVAKSTGAE SDFTLSDRVF HQKFGYGQVT KIDGNKLTIA FDKAGEKKVV
DSFVQRV
|
|---|
| |