| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3349 |
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| Symbol | |
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| ID | 4023860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3713026 |
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| End bp | 3714525 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963554 |
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| Product | peptidase S1C, Do |
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| Protein accession | YP_570474 |
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| Protein GI | 91977815 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.181903 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCTG CGATCCCTGC CTTCAGCTTC CGGAACAGGC CCCTGCTGAC GGCGATCTGC
CTCGGGGCAG CCGTTGCCTT GAGCGCGCCG GCGCCGTCCC ACGCCCGCGG TCCCGAGGGC
ATCGCGGACG TCGCCGAAAA GGTGATTGAC GCCGTGGTCA ACATCTCGAC CACCCAGACC
GTTGAAGCCA AGAATTCACC CGGCGAAGGG AAGGGCGCCA CGCCGAATCT GCCGCCGGGT
TCGCCGTTCG AGGAGTTCTT CGACGACTTC TTCAAGAACC GCCGTGGCGG CGAGAAGGGC
GGCGGGCCGC GCAAGACCAA TTCACTCGGC TCCGGCTTCA TCGTCGACAC CGCCGGCGTC
GCCGTGACCA ACAATCACGT CATTGCCGAC GCCGATGAGA TCAATCTCAT CATGAACGAC
GGCACTAAGA TCAAAGCCGA ACTGGTCGGC GTCGACAAGA AGACCGACCT CGCGGTGCTG
AAGTTCAAGC CGCCGGCGAA CAAGCCGCTC ACCGCCGTGA AGTTCGGCGA CTCCGACAAG
CTGCGGCTCG GCGAGTGGGT GGTGGCGATC GGCAACCCGT TCTCGCTCGG CGGCACAGTG
ACTGCCGGCA TCGTCTCGGC GCGCAACCGC GACATCAATT CCGGGCCTTA TGACAGCTAC
ATCCAGACCG ATGCTGCGAT CAATCGCGGC AATTCCGGAG GCCCGCTGTT CAACCTCAAC
GCCGAAGTCA TCGGCGTCAA CACGCTGATC ATCTCGCCGT CCGGCGGCTC GATCGGCATC
GGTTTCGCGG TGCCGTCGAA GACTGTGGTC GGTGTGGTCG ATCAACTCCG GCAGTTCGGC
GAGCTGCGCC GCGGTTGGCT CGGCGTGCGG ATCCAGCAGG TCACCGACGA AATCGCCGAG
AGCCTGAATA TCAAGCCGGC GCGCGGCGCG TTGGTCGCTG GCATCGACGA CAAGGGGCCG
GCGAAACCGG CCGGCATCGA GCCCGGCGAC GTGGTCGTCA AGTTCGACGG CAAGGACGTC
AAGGAGCCGA AGGATCTGTC TCGCGTGGTC GCCGACACAG CGGTCGGCAA GACCGTCGAC
GTGGTGATCA TCCGCAAGGG CAAGGAAGAG ACCAAGCAGG TCACGCTCGG CCGTCTCGAC
GACGGCGCCA AGCCGCAGCC GGCCTCGGCG AAGTCACAGC CTGAACCGGA AAAGCCGGTG
ACGCAGAAGG CGCTCGGGCT CGACCTCGCG GCGCTGTCGA AGGATCTGCG CGGCCGCTAC
AAGATCAAGG AAACCGTCAA GGGCGTGGTG GTGGTCGGCG TCGACAATGG CTCCGACGCC
GCCGAGAAGC GGCTGTCGGC CGGCGACGTG ATCGTCGAGG TCGCGCAGGA AGCGGTGACC
AGCGCCGCCG ACATCAAGAA GCGCGTCGAC CAGCTTAAGA AGGACGGCAA GAAGTCGGTC
CTGCTGCTGG TCGCCAATGG CGAGGGCGAG CTGCGCTTCG TGGCGCTCAG CCTGCAATAG
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| Protein sequence | MPAAIPAFSF RNRPLLTAIC LGAAVALSAP APSHARGPEG IADVAEKVID AVVNISTTQT
VEAKNSPGEG KGATPNLPPG SPFEEFFDDF FKNRRGGEKG GGPRKTNSLG SGFIVDTAGV
AVTNNHVIAD ADEINLIMND GTKIKAELVG VDKKTDLAVL KFKPPANKPL TAVKFGDSDK
LRLGEWVVAI GNPFSLGGTV TAGIVSARNR DINSGPYDSY IQTDAAINRG NSGGPLFNLN
AEVIGVNTLI ISPSGGSIGI GFAVPSKTVV GVVDQLRQFG ELRRGWLGVR IQQVTDEIAE
SLNIKPARGA LVAGIDDKGP AKPAGIEPGD VVVKFDGKDV KEPKDLSRVV ADTAVGKTVD
VVIIRKGKEE TKQVTLGRLD DGAKPQPASA KSQPEPEKPV TQKALGLDLA ALSKDLRGRY
KIKETVKGVV VVGVDNGSDA AEKRLSAGDV IVEVAQEAVT SAADIKKRVD QLKKDGKKSV
LLLVANGEGE LRFVALSLQ
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