| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3311 |
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| Symbol | |
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| ID | 4023821 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3666332 |
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| End bp | 3668410 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637963515 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_570436 |
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| Protein GI | 91977777 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.968927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCGCAG ACCAGCACGC CTCTCGCCCG ACCAAACGGA TCGTGTTCGA CGATCCGCAT
TCGGTCGACA ACATGCAGGA AGCCGAAGTC ACGCGGGTTC GCACCCTGCA CGGCTTCTGG
CGATGGGCGC TGATCACTGC GGCCGCCGCG ACCATTCTGC TGTGCATCAA CCAGCAATTC
TCGCTGCGGT TCTTCATCGA CTACACCCAG CTCAATACGG AGTACTTTTA TCTCCTGATC
GCCCTGATGC TGCCGTTCAC CTTCCTGATC TTTCCGGGCT CGGCGCAAGC GCGGCTCGAC
CGCGTGCCAT GGTACGACAT CGTACTGTTC ACACTGACGG TCGCGTCGGC GCTGGTGTTG
ATGAGCTACA TCCGCAAGGC GGCCGAGGCC GGCTGGGAGT TCGGCGGCGC GCCGACCCAG
GTGTTCATCG CCGGATTGGC GATGTGGGCG CTTCTGATGG AGGCGCTGCG GCGGACCGGC
GGCTGGAGCC TGCTGCTCTG CGTGTTTCCG TTCACGGTGT ATCCGCTGTT CGCCGGCGCG
AGATGGCTCG GCCCGCTCGG CGGCTCGCAG TCGACGCTGG AACAGGCGAC CGCCTATCAC
GTCCTGTCCG GCGAGAGCCT GCTCGGAATT CCGATCCAGG CCTTTGCCGA CACCGTGATC
GGCTTCCTGG TGTTCGGCAC CGCGCTGATG ATGACCGGCG CCGGCAAGTT CTTCATCAAC
CTTTCCTTTG CGATCTGCGG CACCTTCCGC GGCGGCGCCG CGAAAGTGTG CATCTTCGCC
TCCGGCCTGC TCGGCATGAT GTCGGGCTCG ATCATCTCCA ACGTGCTGAC CGCCGGGACC
ATGACCATCC CGGTGATGAA GAAGAGCGGG TTCCGCGCCT CTTATGCCGC CGCGATCGAA
GCCTGCGCCT CGACCGGCGC TGTGCTGGCG CCGCCGGTGA TGGGCGCCAC CGCCTTCGTG
ATCGCGCAAT TCCTCAATGT TTCCTACGCC GAGGTCGCGG TCGCCGCGAT CATTCCGGCC
ACGCTCTACT ACATCGGCCT GTTCATGCAG GTGGATTCCT ACGCCGCGCG GCACGGGCTG
GAAGGCATCC CGCGCGCCGA ACTGCCGAGC GTGATTCAGA CGCTGAAGGA AGGCTGGTAC
TACGTCTTCG TCATCGCGCT GCTGGTGGTG ATGCTGCTGC ACTTCAAGCG CGAAAGCCAC
GCGCCGTTCT ACGCCACCGC GCTGCTCTTG GTGCTCAACC AGATCTTCTC GAAGGATACC
CGCTGGACGC TCGCGACCAT CGGCCGGTTC TTCGAGGTCA ACGGCCGCAC CTTCGTCGAA
CTGGTCGGCA TTCTCGCCGG ATGCGGCCTG TTGATCGGCG CCTTTTCGAT GACAGGCGTG
ATCTCCAGCC TCGCGGGCGA CCTGCTGCGG ATCGCCGGCG ACAACGCCTT CCTGCTGTTG
GTGATGTGCG CGGTGACGAG CCTGGTCCTC GGTCTCGGGC TGACGACGAC CGCCTGTTAC
ATCTTCCTCG CCATTCTGGT GGCGCCGGCG TTGGAGAAGC TCGGGCTGAA CCGCATGGCG
GTGCACATGT TCATCTTCTA CTGGGGGATG CTGTCGTCGA TCACGCCACC GGTCGCGATC
GCCTCGTTCG CCGCGGCCGG GATCGCCGGA TCGCCGGCGA TGAAGACCGG CTGGGAATCG
ATGTGGGTCG GCAGCATCAT CTATTTCATC CCGTTCTTCT TCGTGATGAA CCCGGCGCTG
GTGATGCAGG GACCGGACCC GTATCTGGCC GCGATCGGCC TGATGGCGCT GGCGGCGATC
GGCACGCTGT TCATCTGCGG CGGCATCCAG GGCTATCAGA TCGGCATCGG CGATCTGCGC
CGGGCCGGCG CGGCGGAATG GCCGCTGCGG ATCGCGCTGG TGATCGGCGG CTTCGTGCTG
GCGACGCCCG GCGGCGGCAT CAATCCGCTG TCACAGATCC AGATCACCGG GCTCGGCCTC
TGCATCCTCA CGCCGACCGT TCTGATCGCA GTGCTTCTCC TCCGGCGCGG CGGCGAGAGC
GGCCTGTTGC GGCCGTCGAC GCGGCCGTCG GCCTCGTGA
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| Protein sequence | MRADQHASRP TKRIVFDDPH SVDNMQEAEV TRVRTLHGFW RWALITAAAA TILLCINQQF
SLRFFIDYTQ LNTEYFYLLI ALMLPFTFLI FPGSAQARLD RVPWYDIVLF TLTVASALVL
MSYIRKAAEA GWEFGGAPTQ VFIAGLAMWA LLMEALRRTG GWSLLLCVFP FTVYPLFAGA
RWLGPLGGSQ STLEQATAYH VLSGESLLGI PIQAFADTVI GFLVFGTALM MTGAGKFFIN
LSFAICGTFR GGAAKVCIFA SGLLGMMSGS IISNVLTAGT MTIPVMKKSG FRASYAAAIE
ACASTGAVLA PPVMGATAFV IAQFLNVSYA EVAVAAIIPA TLYYIGLFMQ VDSYAARHGL
EGIPRAELPS VIQTLKEGWY YVFVIALLVV MLLHFKRESH APFYATALLL VLNQIFSKDT
RWTLATIGRF FEVNGRTFVE LVGILAGCGL LIGAFSMTGV ISSLAGDLLR IAGDNAFLLL
VMCAVTSLVL GLGLTTTACY IFLAILVAPA LEKLGLNRMA VHMFIFYWGM LSSITPPVAI
ASFAAAGIAG SPAMKTGWES MWVGSIIYFI PFFFVMNPAL VMQGPDPYLA AIGLMALAAI
GTLFICGGIQ GYQIGIGDLR RAGAAEWPLR IALVIGGFVL ATPGGGINPL SQIQITGLGL
CILTPTVLIA VLLLRRGGES GLLRPSTRPS AS
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