| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3238 |
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| Symbol | |
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| ID | 4023747 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3592974 |
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| End bp | 3596528 |
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| Gene Length | 3555 bp |
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| Protein Length | 1184 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637963442 |
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| Product | hypothetical protein |
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| Protein accession | YP_570364 |
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| Protein GI | 91977705 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1002] Type II restriction enzyme, methylase subunits |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0308131 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.512831 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGGACT CAATAAGCGT ACCGGCAGTC GAGCAGTTCA TCGCGCGTTG GCAAGGCCGT
GAAGGCGGAC AGGAACGCGC GAACTACGTC TCGTTTCTCA CCGAGTTGAT CGCGCTGCTC
GGGCTGGACA AGCCCGACCC GGCCGACGCG ACGCATGAGC ACAACGACTA CGTGTTCGAA
CGCGCGGTGA AGAAGACCGC CGAAGACAGC GCTTCCTATG GCCGCATCGA TCTCTACAAG
CGCAACAGCT TCGTCCTCGA AGCCAAGCAG AGCCGGATCA AGGGCGGCAA GAAGGAAGTC
AGGGGACAGT ACGATCTGTT GAAGACCGAG GCCACCGCAG CAACGCTCGG CCGCCGCGGC
GCCGATCGCG CCTGGGACGT GCTGATGCTG AACGCCAAGC GGCAGGCCGA GGAATATGCC
CGCGCCCTGC CCGCCTCGCA CGGCTGGCCG CCCTTCATTC TGGTCTGCGA CGTCGGCCAT
TGTATCGAGG TCTATGCCGA CTTCTCCGGC CAGGGAAAGA ACTACACGCA GTTTCCCGAT
CGCCAGAACT TCCGCATCTA TCTCGAGGAT CTGCGCGACC ACGACGTCCG CGAGCGGCTG
CGCAAGATCT GGAGCGAGCC GACCGCGCTC GACCCGTCGC AGCAATCGGC GAAAGTCACG
CGCGACATCG CCAAGCGGCT CGCGCAAGTG TCGCTGGCGC TGGAGAAACA GAACTATCCG
GCCGACGACG TCGCGATGTT CCTGATGCGC TGCCTGTTCA CGATGTTCGC CGAGGACGTC
GAACTGTTGC CGGAAAAATC CTTCAAGCTG CTGCTCGAAG ACTGCGAGAA AAACCCCGAG
GCCTTCGTCC ACGACGTCGG TCAGCTCTGG GAGGCGATGG ACACCGGGCA ATGGGCGCAC
GCGCTCAAGA CCAAGGTCAA GAAATTCAAC GGCGAGTTCT TCAAGAGCCG CGCCGCGCTG
CCGCTCGGCC GCGAGGAGAT CGGCGAGCTG CGGCGGGCCG CCGAGTATGA CTGGAACGAG
GTCGATCCCT CGATCTTCGG CACGCTGCTG GAACAGGCGC TCGATCCGAC CGACCGCAAG
AAGCTCGGCG CGCACTACAC GCCGCGCGCT TATGTCGAAC GGCTGGTGAT CGCCACCATC
ATCGAGCCGC TGCGCGAGGA CTGGCGCAAC GTCCAGGCCA CCGCCGAAAC GCTGCGCGGC
GCAGGCGATC TCGCTGCCGC CGCCGCCGCG GTGCAGGCGT ATCACGACCG GCTGTGCGAG
ACGCGGGTGC TCGACCCGGC CTGCGGCACC GGCAACTTCC TTTACGTCTC GCTCGAACTG
ATGAAGCGGC TGGAAGGCGA AGTGCTGGAA GCTTTGCTCG ACCTCGGCGG CCAGGAAGCG
CTGCGCGGCC TCGGCTCGCA CTCGGTCGAT CCGCATCAGT TCCTCGGCCT CGAAATCAAT
CCGCGCGCCG CGGCGATCGC CGAGCTGGTG CTGTGGATCG GCTATCTGCA ATGGCACTTC
CGCACCAAGG GCGCCCCGCC CGACGAGCCG ATCCTGCGCG CCTTCAAGAA CATCAAGGTC
AAGAACGCGG TGCTCGACTG GGACGGCGCG CCGCTGCCGA AGATCGTCGA GGGCAAAGAG
ACCTATCCGA ACCCGCGCCG GCCGGAATGG CCGGCGGCGG AATTCATCGT GGGGAATCCG
CCGTTCATTG GGGCGAGCTT TTTGCGAGCG CGGCTTGGTG ACACCCACGC TGAAGCGCTT
TGGAGTGCCC ATCCTCAAAT GAATGAGTCG GCCGACTTCG TGATGTACTG GTGGGACCGC
GCGGCCGAAT TGCTGACCCG CAAAGGAACG GTGCTGCGGC GGTTCGGTTT TGTCACGACA
AACTCGATAA CCCAAGTATT TCAGCGTCGA GTGATCGAAA GGCACTTCAA GGCAAAGAGG
CCGATTTCGC TTGCTATGGC AATTCCAGAT CATCCCTGGA CCAAAGCTAC AACGGATGCC
GCAGCGGTAC GGATCGCAAT GAGCGTTGGA GAGACTGGCC GAGGCGATGG ACTGCTCCAG
ATCGTCGTCA ACGAGGCTCA CTTGGATTCA GATACTCCAA TCGTTGAGCT TCAGGGCCGC
GTAGGACCGA TAAACTCAGA CCTCACAATT GGCACAGACC TGACCACCAC CGTGCCTCTA
CGTGCATCTG AAGGCTTGGC ATCTCGTGGA GTTACGCTTG CAGGCTCTGG ATTCTTGATA
ACTTCAGAAG AAGCCGAACA TTTTGGTCTC GGTACGCACG AGAAGCTAAA GCAACATATT
CGAGGACTCC ATAATGGACG CGACCTGAAT CAGACATCAC GTCGAATTCT TGTGCTCGAC
TTCTTAGGGC TGAGCGAAGA GGAAGTCCGA AGGCATTTTC CAGAAGCATA TCAGCATCTA
CTCCGGACAG TGAAACCCGA ACGGGAAACG AACAAGAGAG CATCCTATAG GCAGAATTGG
TGGGTGTTTG CTGAGCCGCG GAAGGAGATG CGTCCCGCGC TGAAGGACTT GGGGCGCTAT
ATCGGTACGG CACGCACCGC TAAGCATAGG ATTTTCTCCA TGTTGGCGGG CCACTCCTTA
CCAGAGAGTG AGGTTATTGC GGTGGGGTCA GACGACGCGT TTATATTGGG AGTACTTTCG
TCACGACTTC ATGTTCGCTG GAGTCTGTCC AAAGGTGGCA CGCTGGAAGA CAGGCCTCGG
TACAATAACA GCATGTGCTT CGATCCCTTC CCCTTCCCCG ACGCCAATCC GATTCAGAAG
CAGACCATTC GGGTCATCGC CGAGGAGCTC GACGCGCATC GCAAGCGGGT GCTGGCGGAG
CATCCGCATC TGACGCTGAC CGGGCTGTAT AATGTGCTGG AGCGGTTGCG GGCGGGGGCT
GTGCCGCAGG CACAGCCGTC ACCCGCGGGC TTGACCCGCG GGTCCACGTC GTCACGCGGT
GCGGCGAAGA AAGACCTGGA TGGCCGGGGC ACTGGACGGC AAGACGGCGC TTCGCGCCTT
TCGCCCGGCC ATGACGATGC AGAGATGGTG CTCACACCCG ACGAGCAGTG CATCTTCGAC
GATGGCCTGG TGCTGATCCT GAAAGAACTG CACGACAGGC TCGATGTCGC GGTGGCCGAG
GCCTATGGCT GGCCGGCGAA CCTGTCCGAC GACGAGATTT TGGCGCGGCT CGTCGCTTTG
AACAAGCAGC GCGCCGACGA GGAAAAGCGC GGGCTGGTGC GCTGGCTGCG GCCCGACTAC
CAGATTCCGC GATTCGCCAA GGGCGTCGAC AAGCAGGCGG CGAAGGAAGA AGGCGCGCAG
ATCGCAGCGT CGCTCGATCT CGGCGAGACC CGGCAGAAGC CGTCGTTCCC GACCGGTGCG
GTGGAGCAGA CCGCCGCGGT GTTCGCAGCG CTGGCCGCAG CCTCCGGCCC GCTCGACGCC
AAATCGCTCG CCGCGCAGTT CAGGCGCACG AAGACGACCG AGAAGAAACT CGCCGAGGTG
CTCGCCTCAC TGGCGCGGCT CGGCTACGTG GCGACCACCG ACGGCGTCAG CTTCGCGCTG
CGCCGGGTCG CGTAG
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| Protein sequence | MGDSISVPAV EQFIARWQGR EGGQERANYV SFLTELIALL GLDKPDPADA THEHNDYVFE
RAVKKTAEDS ASYGRIDLYK RNSFVLEAKQ SRIKGGKKEV RGQYDLLKTE ATAATLGRRG
ADRAWDVLML NAKRQAEEYA RALPASHGWP PFILVCDVGH CIEVYADFSG QGKNYTQFPD
RQNFRIYLED LRDHDVRERL RKIWSEPTAL DPSQQSAKVT RDIAKRLAQV SLALEKQNYP
ADDVAMFLMR CLFTMFAEDV ELLPEKSFKL LLEDCEKNPE AFVHDVGQLW EAMDTGQWAH
ALKTKVKKFN GEFFKSRAAL PLGREEIGEL RRAAEYDWNE VDPSIFGTLL EQALDPTDRK
KLGAHYTPRA YVERLVIATI IEPLREDWRN VQATAETLRG AGDLAAAAAA VQAYHDRLCE
TRVLDPACGT GNFLYVSLEL MKRLEGEVLE ALLDLGGQEA LRGLGSHSVD PHQFLGLEIN
PRAAAIAELV LWIGYLQWHF RTKGAPPDEP ILRAFKNIKV KNAVLDWDGA PLPKIVEGKE
TYPNPRRPEW PAAEFIVGNP PFIGASFLRA RLGDTHAEAL WSAHPQMNES ADFVMYWWDR
AAELLTRKGT VLRRFGFVTT NSITQVFQRR VIERHFKAKR PISLAMAIPD HPWTKATTDA
AAVRIAMSVG ETGRGDGLLQ IVVNEAHLDS DTPIVELQGR VGPINSDLTI GTDLTTTVPL
RASEGLASRG VTLAGSGFLI TSEEAEHFGL GTHEKLKQHI RGLHNGRDLN QTSRRILVLD
FLGLSEEEVR RHFPEAYQHL LRTVKPERET NKRASYRQNW WVFAEPRKEM RPALKDLGRY
IGTARTAKHR IFSMLAGHSL PESEVIAVGS DDAFILGVLS SRLHVRWSLS KGGTLEDRPR
YNNSMCFDPF PFPDANPIQK QTIRVIAEEL DAHRKRVLAE HPHLTLTGLY NVLERLRAGA
VPQAQPSPAG LTRGSTSSRG AAKKDLDGRG TGRQDGASRL SPGHDDAEMV LTPDEQCIFD
DGLVLILKEL HDRLDVAVAE AYGWPANLSD DEILARLVAL NKQRADEEKR GLVRWLRPDY
QIPRFAKGVD KQAAKEEGAQ IAASLDLGET RQKPSFPTGA VEQTAAVFAA LAAASGPLDA
KSLAAQFRRT KTTEKKLAEV LASLARLGYV ATTDGVSFAL RRVA
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