| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3129 |
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| Symbol | |
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| ID | 4023634 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 3480278 |
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| End bp | 3481612 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637963330 |
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| Product | pseudouridine synthase RluD |
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| Protein accession | YP_570256 |
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| Protein GI | 91977597 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.411663 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.42057 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCGTC GTACGAAAAA ACCCCTCGCC AAGCGCGGCC CCGGCGGCGA TCGCCCCAAA
GCCGGCAGCC GGCCGGCCGC GAAGGCCGGT CCGGTGCGCG GCAATCGCAG CGAGGACGGC
CGTCCGATCT CGGCGCGGCC CCAGCGCGAG CCGCGTGGCG AGCGCGCCGA GCGGCCTGCC
GCAAAGCGCC CCGCCGCTGA ACGTTCCGCC GCCGACCGGC CGGCGAGCGC GCGGCCCGGC
CGACCGCCGG CGCGATCTGC GTCGTCATCG CGCCCGCCGC GCGCGCAACG CCCGGAGCCT
GCGCCCGAGC CGGAAAAGAT CGTCCCCGAG CCGGCGCTGC TGCCGACCAA GGTCGAGACC
GTCGTCGTCA CCGCCGACGA GAACAACATG CGGGTCGACC GCTTCCTCGA GGCGCGGTTT
CCGGGTCTGT CGTTCTCCCA CATCCAGCGC ATCGTCCGCA AAGGTGAGCT GCGCGTCAAC
GGCAAGCGCG CCGACAGCAA GGATCGGCTG GAGGAGGGCC AGAGCGTGCG GATTCCGCCG
CTCAAGCTCG ATACGCCGAA GCTGCCCGGG CATCTGTCCG AAGCCGAGCA GAAGACCCTG
CAGGCGTTGA AGGAGATGAC GCTGTACGAG GACGCCGACG TGCTGGTGCT GAACAAGCCG
TTGGGGCTTG CAGTGCAGGG CGGCAGCGGC ACCACGCGGC ACATCGATCT GATGCTCGAG
GTGATGCGCG ACAGCAAGGG CCAGAAGCCG CGCCTGGTGC ATCGCATCGA CAAGGAAACC
GCCGGCTGCC TCCTGGTCGC CAAGACCCGC TTCGCCGCCA CCGCGTTGAC TGGATCATTT
CGCTCGCGTT CAGCGCGAAA AATCTACTGG GCGCTGGTCG CCGGCGTGCC GAAGCCGAAG
CAGGGCCGGA TCTCGACCTA TCTGGCCAAG GACGAGAGCG AGGACGACAG CATCATGCGG
GTCGCCGCCC ATGGCGACGA CGGCGCCAGC CATGCGGTGA CGTACTACGC GGTGGTCGAG
ACCTCGGCGA CCAAGCTCGC CTGGGTGTCG CTGAAGCCGG TGACGGGCCG CACCCATCAG
CTCCGCGCCC ATATGGCGCA TATCGGCCAC GCCATTATCG GCGATCCGAA GTACTTCAAC
ATCGAGAACT GGAAGCTGCC CGGCGGCCTG CAGAACCGGC TGCATCTGTT GGCGCGACGG
ATCGTGATTC CGCATCCGCG CGGCGGCGTG ATCGACGTCT CGGCGCCGCT GCCGCCGCAT
ATGCTGCAGT CGTGGAACCT GCTCGGGCTG GAGCACGACC GGTTCGATCC GATCGAGCAT
GCGCCGGAAG AATGA
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| Protein sequence | MSRRTKKPLA KRGPGGDRPK AGSRPAAKAG PVRGNRSEDG RPISARPQRE PRGERAERPA
AKRPAAERSA ADRPASARPG RPPARSASSS RPPRAQRPEP APEPEKIVPE PALLPTKVET
VVVTADENNM RVDRFLEARF PGLSFSHIQR IVRKGELRVN GKRADSKDRL EEGQSVRIPP
LKLDTPKLPG HLSEAEQKTL QALKEMTLYE DADVLVLNKP LGLAVQGGSG TTRHIDLMLE
VMRDSKGQKP RLVHRIDKET AGCLLVAKTR FAATALTGSF RSRSARKIYW ALVAGVPKPK
QGRISTYLAK DESEDDSIMR VAAHGDDGAS HAVTYYAVVE TSATKLAWVS LKPVTGRTHQ
LRAHMAHIGH AIIGDPKYFN IENWKLPGGL QNRLHLLARR IVIPHPRGGV IDVSAPLPPH
MLQSWNLLGL EHDRFDPIEH APEE
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