| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_3112 |
|---|
| Symbol | |
|---|
| ID | 4023617 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3462037 |
|---|
| End bp | 3462990 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637963313 |
|---|
| Product | dihydrodipicolinate synthetase |
|---|
| Protein accession | YP_570239 |
|---|
| Protein GI | 91977580 |
|---|
| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.114447 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.4337 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACTGA CCCCCGATGC CGCCGGCACC TTCGCCATCG CGCCGACGCC GTTCCATGAG
GACGGCCGGA TCGACGAATC GTCGATCGAT CGGTTGTCCG ACTTCTACGC CGAGGTCGGC
TGCGAGGGCG TCACCGTGCT CGGCATTCTC GGCGAGGCGC CGAAGCTCGA TGCGTCCGAG
GCGGAAGCGG TGGCGACGCG TTTCGTCAAA CGCGCGAAGG CGCTGCAGGT GATCGTCGGC
GTTTCGGCGC CGGGCTTCGC GACGATGCGC GCGCTGGCGC GGGCCTCGAT GGATGCCGGC
GCGGCCGGCG TGATGATCGC GCCGCCGCCG TCGCTGCGGA CCGATGAGCA GATCACCGGC
TATTTCCGGC AGGCCGTCGA GGCGATCGGC GACGACATTC CCTGGGTGCT GCAGGACTAT
CCGCTGACGC TGTCGGTGGT GATGACGCCC AATGTGATCC GGCAGATCGT GATGGACAGC
CCGTCTTGCG TGATGCTCAA GCACGAGGAT TGGCCCGGGC TGGAGAAAAT CACCAAGCTG
CGCGCCTTCC AGAAGGACGG CTCACTTCGA CCGCTGTCGA TCCTCACCGG AAATGGCGGG
CTGTTCCTCG ATTTCGAGAT GGAGCGCGGC GCCGACGGCG CGATGACCGG CTATTGCTTC
CCGGACATGC TGGTCGACGT CGTCAAGCTG TCCAAGGCCG GCCAGCGCGA CCTCGCGCAC
AATCTGTTCG ATGCGCATCT GCCGCTGATC CGCTACGAGC AGCAGCCGGG TGTCGGCCTG
GCCGTGCGCA AATACGTGCT CAAGAAGCGC GGCATCATCG CGTCGAGTGC GCAGCGCAAG
CCGGGCTCGA GCTTGAGCGA AACGGCGCGC GAGGAGGTCG ACTATCTGCT GTCGCGGCTC
GCGCGCGTGG ACGAGCGGGC TGATTTCGAA TCTCGTTCGA AGGCGGCGGA GTAA
|
|---|
| Protein sequence | MKLTPDAAGT FAIAPTPFHE DGRIDESSID RLSDFYAEVG CEGVTVLGIL GEAPKLDASE
AEAVATRFVK RAKALQVIVG VSAPGFATMR ALARASMDAG AAGVMIAPPP SLRTDEQITG
YFRQAVEAIG DDIPWVLQDY PLTLSVVMTP NVIRQIVMDS PSCVMLKHED WPGLEKITKL
RAFQKDGSLR PLSILTGNGG LFLDFEMERG ADGAMTGYCF PDMLVDVVKL SKAGQRDLAH
NLFDAHLPLI RYEQQPGVGL AVRKYVLKKR GIIASSAQRK PGSSLSETAR EEVDYLLSRL
ARVDERADFE SRSKAAE
|
|---|
| |