Gene RPD_3059 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3059 
Symbol 
ID4023562 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3407808 
End bp3408536 
Gene Length729 bp 
Protein Length242 aa 
Translation table11 
GC content66% 
IMG OID637963258 
Productheat shock protein DnaJ-like 
Protein accessionYP_570186 
Protein GI91977527 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTACAT TGATCGCCGG CGTTATCGCC GTTTTCGTTC TCTATACTGT GCTGCAGATG 
GTTCGGTCGG CCAACCCGGC CGTGCTGGCG CGGGCGATCA AGATCGCCGG CGGCATCGTC
ACGCTCGCGG CGGCGCTGTT CACCGGTGTG AAGGGCGAAT TGGCGGTGGC GATCCCGCTC
GGCTTGTTCG GCGCCGGGCT GCTCGGCTGG GCGCCGATGG GCAATGCCGG ATTTGGCAGG
CTTGGCGGGC TGTTCGGATC GGCCGGCCGG CGTTCGAGCG GGCAATCGTC CCGGGTGCGC
TCGTCCTATC TCGAGATGAC GCTCGATCAT GAGAGCGGTG CGATCAGCGG CCGCCTGCTG
GCCGGCCCGC AAGCGGGCCG CTCGCTGGAC GAGTTCGATC TTCCCGAGCT CGCTGCGATG
ATGACCGGCT TCGACGCCGA GAGCTGTGCG CTACTTGAAA GCTATCTGGA CCGCCGGTTT
CCCGCTTGGC GTCAGCACGC GCAGGGAGAC CCGGCAGGGG GGCAGGGACG CCAGACGTCG
AGCGGCAAAA TGACGACCGA GGAGGCCTAT CAGATCCTTG GCCTGCAGCC GGGCGCGGGG
CCTGACGAGA TCGGGCGCGC TCACCGCACC CTGATGAAGA AATTGCATCC CGACCAAGGG
GGGTCGACGT ACCTTGCCGC CCGTGTAAAC GCGGCTAAGG ATACTTTGCT TCGCACGCAT
CGCAGCTGA
 
Protein sequence
MPTLIAGVIA VFVLYTVLQM VRSANPAVLA RAIKIAGGIV TLAAALFTGV KGELAVAIPL 
GLFGAGLLGW APMGNAGFGR LGGLFGSAGR RSSGQSSRVR SSYLEMTLDH ESGAISGRLL
AGPQAGRSLD EFDLPELAAM MTGFDAESCA LLESYLDRRF PAWRQHAQGD PAGGQGRQTS
SGKMTTEEAY QILGLQPGAG PDEIGRAHRT LMKKLHPDQG GSTYLAARVN AAKDTLLRTH
RS