Gene RPD_3022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3022 
Symbol 
ID4023525 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3365987 
End bp3367972 
Gene Length1986 bp 
Protein Length661 aa 
Translation table11 
GC content62% 
IMG OID637963221 
Productmyosin-cross-reactive antigen 
Protein accessionYP_570149 
Protein GI91977490 
COG category[S] Function unknown 
COG ID[COG4716] Myosin-crossreactive antigen 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.463393 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.320789 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAC CAGCCCGTCA TCCGATCAAG CCGGTTTCCG GCAAGCCTCC GATCGAGGCC 
AATGTGGGCG CAGGCTTCTG GCGCAAAGGC CCGGCCGATA CGCTGCCGCC GCCCGACATG
GTGGGCCCGT ATATGCGCAA CCGTCCGGTG CCGGTCGCAC CTATGGAAGG CCGCAAGGCC
TGGATCATCG GCAGCGGCAT TGCCGGGCTG TCGGCCGCCT TCTACCTGAT CCGCGACGGC
GGCATGAAAG GCGAGGACAT CACCATCTTC GATACGCTGG AGATCGCCGG CGGCTCGCTC
GATGGCGCCG GCAACGCCGA CGAAGGCTAC ATCATCCGCG GCGGCCGCGA GATGAATTTC
AACTACGACA ATTTCTGGGA TGTGTTTCAG GACGTGCCAG CGCTGGAATT GCCCGACGGA
TATAGCGTCC TCGACGAATA TCGTCTGGTG AACGACAACG ATCCGAACTG GTCGAAGGCG
CGGCTGATGC ACAAGCAGGG CCAGATCCGC GACTTCTCGA CGCTGGGCCT GAGCAAGCTA
CACCAGTGGG AGATCGTCAA ACTGCTGCTG AAGCGCAAGG AAGACCTCGA CGACATCACC
ATCGAGCAAT ATTTCAGCGC CAGCTTCCTC GAAACCAATT TCTGGTATCT CTGGCGCTCG
ATGTTCGCTT TCGAGAATTG GCAGAGCCTT CTGGAAATGA AGCTCTACAT GCATCGATTC
ATCGATGCGA TCGACGGCCT GACCGACATG TCGGCGTTGG TTTTCCCGAA GTACAATCAG
TATGACAGCT TCGTCGTGCC GCTGACCCGC CTGCTCAAGG AGAAGGGCGT CAAGATTCAG
TTCGGCGTCC GGGCCTATGA TCTCGACATG GTCGAGAAGG CAGGCCGGCG CACTGTGACT
GCCATCCGCT GCAAGAAGGC TGGTCAAAAC GACAGCATCG CCGTCGGGCC GAATGACGTC
GTGTTCGCGC TGACGGGCTC GATGACCGAG GGCACGGCTT ACGGCGACAT GAACGTCGCC
CCCGTACTGG CCCGGGGCAA TGCCGAACCG GGCGAGGACA GCGACTGGAC GCTGTGGAAG
AACCTGGCAA AGAAATCGCC GATCTTCGGC AAGCCCGAGA AATTCTACGG CAATGTCGCA
GGCTCGATGT GGGAATCGGC GACGCTCACC TGCAAGGCTT CGCCCCTTGT CGACAAGTTG
AAGGAATTAT CGGTCAACGA TCCGGCGTCG GGCAAGACGG TGACCGGCGG AGTCATCACC
TTCACCGACT CGAACTGGGT GTTGAGCTTC ACCTGCAACC GCCAGCCGCA TTTTCCGACC
CAGCCCGACG ATGTGCTGGT GCTGTGGGTC TACGCCCTGC TGATGGACAA GGACGGCAAC
TACGTCCAGA AACCGATGCC CGCCTGCACC GGCCGGGAAA TTCTGGCGGA GCTCTGCTAT
CATCTGGGGA TCGTCGACCA GCTCGACGCG ATCGCGGCCA AGACCAAGGT TCGTCTGGCG
CTGATGCCCT ATATCACCGC GCAATTCATG CCGCGGGCGG CGGGTGATCG CCCCCGCGTC
GTGCCCGAGG GCTGCACCAA CCTGGCCCTC GTCGGGCAAT TCGTGGAGAC CAGCAACGAC
GTCATCTTCA CGATGGAGTC TTCGGTGCGC ACGGCGCGGA TCGGTGTCTA TACGTTGCTG
GGCCTGCCCA AGCAGGTCGC CGATATCAGC CCCACGCAAT ACGACATCCG CAACCTGCTG
AGGGGGGCGC GCGCGCTCAA CAACAACGAG CCGTTCCCCG GCGAACGGCT GCTGCATCGT
CTGCTCGACA ACACCTACTA CGCCCATGTC TTGCCGCCGC TGCCGGAGCA GGAGGACACC
CTTCGCGAAC GCGCCGAAGC CGAACTGTCG ACGCTGTTGG GCAAGGGAAG CCAGGCGCTC
GGTGCGGTCG TCGGCTGGCT CGACCGGATG CGGGATGGAC TAAGCGACAC ATCGAAGCAA
AAGTAA
 
Protein sequence
MTEPARHPIK PVSGKPPIEA NVGAGFWRKG PADTLPPPDM VGPYMRNRPV PVAPMEGRKA 
WIIGSGIAGL SAAFYLIRDG GMKGEDITIF DTLEIAGGSL DGAGNADEGY IIRGGREMNF
NYDNFWDVFQ DVPALELPDG YSVLDEYRLV NDNDPNWSKA RLMHKQGQIR DFSTLGLSKL
HQWEIVKLLL KRKEDLDDIT IEQYFSASFL ETNFWYLWRS MFAFENWQSL LEMKLYMHRF
IDAIDGLTDM SALVFPKYNQ YDSFVVPLTR LLKEKGVKIQ FGVRAYDLDM VEKAGRRTVT
AIRCKKAGQN DSIAVGPNDV VFALTGSMTE GTAYGDMNVA PVLARGNAEP GEDSDWTLWK
NLAKKSPIFG KPEKFYGNVA GSMWESATLT CKASPLVDKL KELSVNDPAS GKTVTGGVIT
FTDSNWVLSF TCNRQPHFPT QPDDVLVLWV YALLMDKDGN YVQKPMPACT GREILAELCY
HLGIVDQLDA IAAKTKVRLA LMPYITAQFM PRAAGDRPRV VPEGCTNLAL VGQFVETSND
VIFTMESSVR TARIGVYTLL GLPKQVADIS PTQYDIRNLL RGARALNNNE PFPGERLLHR
LLDNTYYAHV LPPLPEQEDT LRERAEAELS TLLGKGSQAL GAVVGWLDRM RDGLSDTSKQ
K