Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPD_2998 |
Symbol | |
ID | 4023501 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB5 |
Kingdom | Bacteria |
Replicon accession | NC_007958 |
Strand | + |
Start bp | 3339430 |
End bp | 3340173 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637963197 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_570125 |
Protein GI | 91977466 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.264049 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.384966 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCCAAC CCCTCGCCTC CCGCATCGCT CTCGTCACCG GCGCTTCGCG CGGAATCGGC TATGCGACCG CGCGCGCCTT GGCCAAGGCC GGCGCGCATG TGATCGCCGT CGCCAAGACA CAAGGCGGAC TCGAGGAGCT CGACGACGCG GTGCGCAATG ATGGCGGCCA CGCCATTACG CTGGTGCCGG TGGATCTCAC CGATTTCGAG GCGATCGCCC GCCTCGGCGC CTCGATCCAC GAGCGCCACG GCAAGCTCGA CGTGCTGGTC GGCAATGCCG GCATCGCCGG TCCGTCGTCG CCGCTCGGCC ATATCGAGAT GAAGTCCTGG ACCGGCGTGA TCGGTCTGAA CCTCACCGCC AACTTCCAGC TGATCCGCTG CATGGAGCCG CTGCTGCGGA TGTCCGATGC CGGACGCGCC GTGTTCCTCA CCTCGCGTGC CGGCGGCAAG GCCCCGGCCT ATCGCGGTCC CTACGCGGCG TCGAAGGCGG CGCTTGATAC TTTAGTTCAA GTCTGGGCCA AGGAAGTCGT CAATACGACG CCGATCCGCG TCAACCTGTT CGATCCCGGC CCGACCCGTA CCAAGCTGCG CGGCACCATC ATGCCCGGCG AAGACCCGGA AACGCTACAG ACTCCGGATC AGGTCGCGGA ATTACTGGTA CCGCTGTGCC TGCCATCCTG GACGGAGACC GGCAAGCTGT TCGACGGCGC ATCCCGGACC GTGAAAGACC CCTCCGCCGA TTGA
|
Protein sequence | MTQPLASRIA LVTGASRGIG YATARALAKA GAHVIAVAKT QGGLEELDDA VRNDGGHAIT LVPVDLTDFE AIARLGASIH ERHGKLDVLV GNAGIAGPSS PLGHIEMKSW TGVIGLNLTA NFQLIRCMEP LLRMSDAGRA VFLTSRAGGK APAYRGPYAA SKAALDTLVQ VWAKEVVNTT PIRVNLFDPG PTRTKLRGTI MPGEDPETLQ TPDQVAELLV PLCLPSWTET GKLFDGASRT VKDPSAD
|
| |