| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2976 |
|---|
| Symbol | |
|---|
| ID | 4023479 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 3315413 |
|---|
| End bp | 3316690 |
|---|
| Gene Length | 1278 bp |
|---|
| Protein Length | 425 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637963175 |
|---|
| Product | aminodeoxychorismate lyase |
|---|
| Protein accession | YP_570103 |
|---|
| Protein GI | 91977444 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1559] Predicted periplasmic solute-binding protein |
|---|
| TIGRFAM ID | [TIGR00247] conserved hypothetical protein, YceG family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.202928 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAA GGCCGCCGAT CTCGCCGAGA AGCCCGCGTG CGGCGCTGGA ACCGGAGCAA
CTCCCGCCGC CGCCGAAGCG GTCCGATCGG GCGCGCAGCC CGTTGGTCAT CATCGGCAAC
GCCATCATCA CCATCCTGCT CGTCCTGATG ATCGGTGCCG GCGGCATCTA CGTCTACGGC
AAGCAGAAGA TCGAGGCGGC CGGTCCGCTG CAGGAAGACA AGGTTGTTAA TATTCCGCAG
CGTGCGGGGC TCGGCGATAT CGCCGAGATC CTGCAGCGTG AAGGCGTGAT CGAGAACAAT
CGCTGGGCTT TCATCGGCAG CGTGTTGGCC TTGAAGGCGC GTTCGGAACT GAAGCCCGGC
GAATATTCGT TCCATAAGAA GGCCAGCCTG CGCGACGTCA TCGGCACCAT CGTTGAGGGC
AAGGTGGTGC AGCACACCGT GACGATTCCG GAAGGCCTGA CCTCGGAACA AATCGTTGCG
CGGTTGTCCG AGAACAACAT CTTCAGCGGA AGCCTGCGCG AAATCCCGCG CGAGGGAACG
CTGTTGCCGG AGACCTACAA ATTCCCGCGC GGGACGATGC GCGATCAGGT GATCAATCGG
ATGCAGCAGG CTCAGAAGCG CGTGCTCGCA GAAGTCTGGG AGCGGCGCAA CCCGGAAATT
CCGATCAAGT CGCCGGAGCA ATTGGTGACG CTCGCGTCGA TCGTGGAGAA GGAGACCGGC
AAGGCGGATG AGCGCAGCCG GGTCTCGTCG GTGTTCATCA ATCGACTGCA GAAGAAGATG
AAGCTGCAGT CCGATCCGAC GATCATTTAC GGCCTGGTCG GCGGCAAGGG CACGCTTGGA
CGGCCGATCA AGCGCAGCGA AATCCAGCAG CCGTCCCCGT ACAACACCTA TGTCATCGAC
GGCCTGCCGC CGGGGCCGAT TGCCAATCCC GGTCGTGCGT CGCTCGAGGC CGTGGCGAAT
CCGGCCCGCA CGCGCGATCT CTATTTCGTC GCCGACGGCA CCGGCGGTCA CGCCTTCAGC
GACGGCTACG ATCAACACTT GAAGAACGTG GCGAAGCTGC GTGCGCAGGA ACGCCAGATG
CAGAACGACA CCGTCGAGCC GGCGGAGGAC GCTCCGCCGA CGGCAACGAT TACTCCCGAT
GCCGACGGCT CGGCGGCCGC GCCGGCGGCG GTGCCCAAGC CCGCGAAAAA TGCCGGGACG
CCGAAGAAGC GAACGCGGAA CGGGACGCAA AACAGCGCCG CCCCAACTGG CGCGCCGGCG
GCGGCAGACC AGGACTAG
|
|---|
| Protein sequence | MSERPPISPR SPRAALEPEQ LPPPPKRSDR ARSPLVIIGN AIITILLVLM IGAGGIYVYG
KQKIEAAGPL QEDKVVNIPQ RAGLGDIAEI LQREGVIENN RWAFIGSVLA LKARSELKPG
EYSFHKKASL RDVIGTIVEG KVVQHTVTIP EGLTSEQIVA RLSENNIFSG SLREIPREGT
LLPETYKFPR GTMRDQVINR MQQAQKRVLA EVWERRNPEI PIKSPEQLVT LASIVEKETG
KADERSRVSS VFINRLQKKM KLQSDPTIIY GLVGGKGTLG RPIKRSEIQQ PSPYNTYVID
GLPPGPIANP GRASLEAVAN PARTRDLYFV ADGTGGHAFS DGYDQHLKNV AKLRAQERQM
QNDTVEPAED APPTATITPD ADGSAAAPAA VPKPAKNAGT PKKRTRNGTQ NSAAPTGAPA
AADQD
|
|---|
| |