| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2925 |
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| Symbol | |
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| ID | 4023428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 3260895 |
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| End bp | 3262040 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637963125 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_570053 |
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| Protein GI | 91977394 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.011944 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTACA CGGTGTTCTC CAGATTCCTG CATCCTGACC CGCGGATTCG GCGCGAGCTC
GTCGATCTGC TGCACACCTC GCTGCCGCAG GTGACGGCGA TCAGCCTCAC CTCCGTCACC
GGCGCGGTGA TCCTCGCGAC GATCACCGGA GACCTGGGCT ACGCTGTGAT CTCGTTCTTC
ATTCTGGTGA CGGCCACGGC CCGGATCGTC GCGCTGCTGC GCTACGAGTC CCACGCGGCG
GAATTTTCCG ATGCCGATGT GGTGCGATGG GAGCGGATGT ACGGCGCCGG CGCATGCGCC
TTCGGTCTCG CGCTCGGCGC GCTGTCCTAT CGCGCGCTCG AACTCGACGA TGCGCCCGGC
GCCTGGCTGG CGTTCGGCCT CTCGATGTCC TACTGCGTCG GCATGGTGTC GCGCGCGGCG
ATCCGCCCCT GGATCATCCT GACCGCCGCG GCGACCTTGC TGCTGCCGAC CATCGTCGCC
GGACTGCTGC GCAGCGAGGT GGCCTACCAG ATCGGCGCCG GAATGCTGGC GTTCTTCTGG
CTGACATTGC GGGAAGCCTC CAAGCATCTC AGCGAGGCCT TCGTCGAGCG GCTCGAGGAC
AAGCATCGCC TGGCGCGCCA GGCGACCCAT GATTTCCTCA CCGGCCTGCC GAACCGCGCC
GCATTTCTCC AGGCGCTCGC GACCATCGAG GGGACCTTCA CCATCATCGC CATCGACCTC
GACGGGTTCA AATCGGTCAA TGACCGTCAC GGTCATCACG CCGGCGACGA ATTGTTGCGT
CAGGTCGCCA AGCGGCTGGC CTTGTGTACC GGCGCTGACG GCATCGCCGC GCGGTTCGGC
GGCGACGAAT TCATGCTGCT GAAGTCGATC ACAGCCGGCG ACGACGGGCG CGCCGAGGCG
CTCGATCTGG CGCGCAGGGC CGTGATCGAT CTCTCGATGC CTTACCGGTT GTCCGACGTG
CCGGTTCGCA TCGGCGCCAG CGCCGGCATT CTGGTCAGCG ACCACGCGCT TGCGGCCGGC
TCGACATCGC AACTGCTGGA GCGGGTCGAC CGCGCGCTCT ACAAGGCCAA GCGCGCCGGC
GGCGGCACCG CCTGGTCGGA CGCCGAGCCA GAGCCCGAAC CCGAGCTCGA ACGCCGCGCG
AGCTGA
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| Protein sequence | MPYTVFSRFL HPDPRIRREL VDLLHTSLPQ VTAISLTSVT GAVILATITG DLGYAVISFF
ILVTATARIV ALLRYESHAA EFSDADVVRW ERMYGAGACA FGLALGALSY RALELDDAPG
AWLAFGLSMS YCVGMVSRAA IRPWIILTAA ATLLLPTIVA GLLRSEVAYQ IGAGMLAFFW
LTLREASKHL SEAFVERLED KHRLARQATH DFLTGLPNRA AFLQALATIE GTFTIIAIDL
DGFKSVNDRH GHHAGDELLR QVAKRLALCT GADGIAARFG GDEFMLLKSI TAGDDGRAEA
LDLARRAVID LSMPYRLSDV PVRIGASAGI LVSDHALAAG STSQLLERVD RALYKAKRAG
GGTAWSDAEP EPEPELERRA S
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