| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2676 |
|---|
| Symbol | nusB |
|---|
| ID | 4023173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2988844 |
|---|
| End bp | 2989368 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962874 |
|---|
| Product | transcription antitermination protein NusB |
|---|
| Protein accession | YP_569806 |
|---|
| Protein GI | 91977147 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0781] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR01951] transcription antitermination factor NusB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0143299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGAGC CGAAGAAGCC GTTCATGCGC AAGCCGCCGC CCAAAACCGG CGACAAGAAG
CCCGGCGACA GGAAAGCCAA CCGCCGCGGC GCGGCGCGGC TCGCTGCGGT GCAGGCGCTG
TACCAGATGG ACATCGGCGG CGCCGGCATC GACGACACCT TCGCCGAGTT CGAGAGCCAC
TGGATCGGCA ATGAGGTCGA GGGCGATCAA TATCTGCCGG CCGAAGCCGC GTTCTTCCGT
GACATCGTTT CCGGCGTGGT CCGCGACCAG ACCAAACTCG ATCCGCTGAT CGACGAGGCG
CTGGCGAAAG GCTGGCCGCT GGCGCGGATC GACGCCATCA TCCGCGCGGT GATGCGCGCC
GGCGCCTACG AGCTCGAACA CCGCAAGGAT ATCCCGGCTC GCGTCGTCGT CTCCGAATAT
GTCGACGTCG CGCACGCCTT CGTCGAGAAG GACGAAACCG GCATGGTCAA CGCCGTGCTC
GACCAGATCG CGCGGCAGTT TCGTGCCGAT GAGTTTACGA AGTAA
|
|---|
| Protein sequence | MVEPKKPFMR KPPPKTGDKK PGDRKANRRG AARLAAVQAL YQMDIGGAGI DDTFAEFESH
WIGNEVEGDQ YLPAEAAFFR DIVSGVVRDQ TKLDPLIDEA LAKGWPLARI DAIIRAVMRA
GAYELEHRKD IPARVVVSEY VDVAHAFVEK DETGMVNAVL DQIARQFRAD EFTK
|
|---|
| |