| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2451 |
|---|
| Symbol | |
|---|
| ID | 4022942 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | - |
|---|
| Start bp | 2737332 |
|---|
| End bp | 2738585 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637962644 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_569582 |
|---|
| Protein GI | 91976923 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.367941 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCCAA CGTCTCCCGG GAAGGATCGC CCCTTGGATC AGCGCATTTC GCAGCGGACC
GGCCTCGTCG TGCTCGGCCT GTGCTTTGTG CTGGCGATGC TCGGACGCGG TCTCGGCGAG
AGCTTCACTG TCTTTCTGCT GCCGATCTCG CAATCCTTCG GCTGGGACCG CGCCGAGGTC
GTGTCGATCT ATTCGCTGTC TGCACTGTGC AGCGGCCTCG CCTCGCCGCT GGTCGGCCGG
CTGTTCGACC GCTCCGGGCC ACGCGCGGTC TACACCCTCG GCATGGTTCT GCTCGGCGGC
GCCTTTCTCG CGGCGGCGTT CGCGCAGCAA CTCTGGCAAT TACAGATCGC GATCGGCCTG
TGCGTCGGGC TCGGCATCAC CTTCACCGGC AATGTGCCGA ATTCCATTCT GCTCGGGCGC
TGGTTCGGTC CACGGCTGCC CACCGCGATG GCCGTGGTGT ATTCGGCGAC CGGCGCCGGC
GTGCTCGTGA TGTTGCCGAT CGCGCAGCTT CTGATCGACC AGATCGGCTG GCGCGGCGCC
TATCAAAGCT TCGGCGCCGC GATGCTGGTC CTGCTGCTGC CGCTGCTGGT GCTGCCGTGG
CGCCGCTATG CCGGCGGCTC GGAGGTGCTG GCGCAGTCGG CGCTGGCCGA TCCTGCGGAC
GACGGCTGGA CGCTGCGCAA TGCGATTCGT CACCACGCGT TCTGGGCGCT GTTCGCGACG
TTTTTCTTCA CCGCGATCGG AATGTACGCG ATCGCACCGC AGGTCGTCGC CTATCTGGTC
GACGCCGGCT TTCCGCCGCT GCATGCGGCC ACCGCCTGGG GCTTCTCCGG CGTCGTGCTG
GTGGTCGGCA TGCTCGGCGT GAGCTGGCTC GACGGCGTGA TCGGGCGCCG GCCGTCGATC
CTGTTCAGCT ACGCGATCTC GATCATCGGA ATCGTGATGC TGTGGCTGGT GAAGTGGTAC
CCCAATTACT TCCTGCTGAC GGGTTTTGTG CTGTGCTTCG GCAGCATGAT CGGCTCGCGC
GGACCACTGA TCACCGCGAC CGCAATGAAG GTGTTTCGCG GCAAGCAGGT CGGCCTGATT
TACGGCACCA TCGCAATCGG CAGCGGGCTC GGATCGGCGT TCGGCTCGTG GTGCGGCGGC
CTGATTCACG ATCTCAGCAA CAGCTATGAC CCGGTGATCG GCTTCGCGCT GGTCAGCGTG
CTGATCGGCA TGATTCCGTT TCTGGTGGTG CCGGCGCTGC GCGAACGCCA TTGA
|
|---|
| Protein sequence | MEPTSPGKDR PLDQRISQRT GLVVLGLCFV LAMLGRGLGE SFTVFLLPIS QSFGWDRAEV
VSIYSLSALC SGLASPLVGR LFDRSGPRAV YTLGMVLLGG AFLAAAFAQQ LWQLQIAIGL
CVGLGITFTG NVPNSILLGR WFGPRLPTAM AVVYSATGAG VLVMLPIAQL LIDQIGWRGA
YQSFGAAMLV LLLPLLVLPW RRYAGGSEVL AQSALADPAD DGWTLRNAIR HHAFWALFAT
FFFTAIGMYA IAPQVVAYLV DAGFPPLHAA TAWGFSGVVL VVGMLGVSWL DGVIGRRPSI
LFSYAISIIG IVMLWLVKWY PNYFLLTGFV LCFGSMIGSR GPLITATAMK VFRGKQVGLI
YGTIAIGSGL GSAFGSWCGG LIHDLSNSYD PVIGFALVSV LIGMIPFLVV PALRERH
|
|---|
| |