Gene RPD_2345 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_2345 
Symbol 
ID4022834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2617018 
End bp2618763 
Gene Length1746 bp 
Protein Length581 aa 
Translation table11 
GC content66% 
IMG OID637962538 
Producthypothetical protein 
Protein accessionYP_569478 
Protein GI91976819 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.722674 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.489611 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACGGT TGTCAGGACA GCGGATCGGA CAAAGTGTGA TGGCGGCGCT GGCCGTGGCG 
ATGTTCAGCG CCAGCGCTTT GGCGCAGGAA GTCGGCAAGG CCTCCGCGGT CAATCCCAAT
GCGACCGCGA ATTTGCGGAC GATCACCATC GGCGCATCAA TCACGCACAA GGAGCGGATT
CAGACGACCT CGGCCGGTTC GGTGCAATTG CTGTTTCTCG ACAAGACGTC GATGACGGTC
GGTCCGAACA GCGATCTGAC GATCGACGAA TACGTCTATG ATCCGAACGC CGGCAGCGGC
AAGCTTGCGG CGACACTCGG CAAGGGCGCG TTGCGCTTCG TCGGCGGCCA GATCAGCCAC
ACCGGCGACG CCGAGATCAG GACGGCCTCC GCGACCGTCG GCATTCGCGG GGGCGTCGCG
TTGATCGGGA CGCATCATGT CTATGCCGGC TACGGCAGTT CGACGGTCTC CTCCGGCGGA
TCGACGGTGA CGCTCGGGGC CGGCGAATAC ACTGCTCTGC AGGGTGGCCA GCCGCCGTCG
CCGCCCGGCC CGCCGCCGCC GAATTTCGTC CTGAACCAGA TCCAGCTGTT CCAGAGCGGC
AGCGGCCAGT TCGGCGGCGT CGCGCGCGGG GCTGCATCGC AGGGCAACGT CCAGCGTGCC
GAGAACCGCG CCACCGGCAC GCCGGGCGGC TCGGTCGCGG GTTCTCTCAC ACCGCAGGCT
CCGCCGCCGC CGACTCCGCG GATCAATCCT GTGGTCTCGA CGCTGAACCA GACCATTCAA
ACCTCGACGC AGCAGTCCGC AGTGCAGCCT TTGGCGCAGC AAATTCAGCA AGAGCAGGCC
GCCAACGCGC GGCCGTCGCT GACGCTGACC GGCTTCGTCG GCGGGTTAAT GACCAGCGTG
TTCAACGCCT CCACCTATTA CGCGCCGTCT TCGACCGGCG TGGCCGGCGG CACCGCCAGC
GTCGCGCTCG ACGCGACGAC GGGGCGGATG CAGGCGAATT TCAACGGCGA TGTCGCGCAC
GGCCCGAATT CGTATTATCT GCCGACCACG TTCAACTATC AGTTTGGATC GACCGATCCG
AATCTCGACG CGCAGGGCGC CTATGGCGAC TACAATCATT TCGGCGGGGC GGCCGCGGAG
GACAAGACTG GCAAACCATT GTCGACCATC AACGGCCTGC CGGTCACCAA CCAGGTCGGC
GCGATGCTGA CGGTCACGAG AGAGCAGGCG CGGCAATTGA CGTCGGACGA TGGCTCGGCG
GCGACGACCA ATTTCTGCCA GTGCGACTAC ACGCGCTGGG GGCTATGGGC CAATCAGAGC
ACGCGATCTT CGTACGCCGA TACGATCCTC GGCTTCTGGG TCGCCGGCCG CCCGACCACG
GCGACCGAGG TGCCGACTTC TGGGCAGGCG ACCTATGCGG GGCATGTCAT CGCCGCGATC
GACAACCAGG GCACCCAGTA CGTGTCGACC GGCAATTTCA GCAACACGGT GAACTTCGGA
ACGCGTAGCG GGCAGGTGAC CGTGACGGGT CTCGACAGCA CCAACTATAC GGGACAGGTG
CAATTCCTGC CCGACCCGCG CAACTTTGCC GGCTCGCTCG CTGGCGACAC CGGGGCGCGG
CAGATGGCGC TGACCGGCAG CTTCTTCCGC GGCGCGAGCA GTCCGGTCGG GGAGATGGGC
GGCGCCGTGG CGATTTCCGG CACCAATTAT CTCGGTGGCG GCATTTTCGC GGCGCAGAAG
AAATAG
 
Protein sequence
MRRLSGQRIG QSVMAALAVA MFSASALAQE VGKASAVNPN ATANLRTITI GASITHKERI 
QTTSAGSVQL LFLDKTSMTV GPNSDLTIDE YVYDPNAGSG KLAATLGKGA LRFVGGQISH
TGDAEIRTAS ATVGIRGGVA LIGTHHVYAG YGSSTVSSGG STVTLGAGEY TALQGGQPPS
PPGPPPPNFV LNQIQLFQSG SGQFGGVARG AASQGNVQRA ENRATGTPGG SVAGSLTPQA
PPPPTPRINP VVSTLNQTIQ TSTQQSAVQP LAQQIQQEQA ANARPSLTLT GFVGGLMTSV
FNASTYYAPS STGVAGGTAS VALDATTGRM QANFNGDVAH GPNSYYLPTT FNYQFGSTDP
NLDAQGAYGD YNHFGGAAAE DKTGKPLSTI NGLPVTNQVG AMLTVTREQA RQLTSDDGSA
ATTNFCQCDY TRWGLWANQS TRSSYADTIL GFWVAGRPTT ATEVPTSGQA TYAGHVIAAI
DNQGTQYVST GNFSNTVNFG TRSGQVTVTG LDSTNYTGQV QFLPDPRNFA GSLAGDTGAR
QMALTGSFFR GASSPVGEMG GAVAISGTNY LGGGIFAAQK K