| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_2003 |
|---|
| Symbol | |
|---|
| ID | 4022485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2240201 |
|---|
| End bp | 2242183 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637962196 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_569139 |
|---|
| Protein GI | 91976480 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.151037 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCCG AAGCGGGGCA CTACGCGCTG GTGCTGGCGC TTGCGCTGGC GTTGATCCAG
TCCACCGTGC CGATCCTCGG CGCGCGGCTG AACGACGGCG GCCTGATGAA TGTCGCGCGC
TCCACGGCGC TCGCACAATT CGCCTTCGTC GCGGCGTCGT TCGGCGCGCT GGTTTATCTC
AACGTCACCT CGGACTTCTC GGTTCTCAAT GTCTACGAGA ACTCGCATTC GGCAAAGCCG
CTGCTCTACA AGATCACCGG CGTGTGGGGA AACCACGAAG GCTCGATGCT GCTGTGGGTC
GCGATCCTGG CGCTGTTCGG CGGTCTGGTC GCTGCATTCG GCAACAATCT GCCGCTTTCG
TTGCGCGCCC ATGTGCTGGC GGTGCAGGCC TGGGTCGCCA GCGCGTTCTA TCTGTTCATC
CTGATCACCT CGAACCCGTT CCTGCGGATT CCCAATCCGC CGATCGAGGG GCGTGACCTC
AATCCGGTAT TGCAGGACAT CGGCCTCGCG GTGCATCCGC CGCTGCTCTA TCTCGGCTAT
GTCGGCTTCT CGATCTCGTT CTCCTTCGCC GCCGCGGCGC TGCTCGAAGG CCGGCTCGAC
GCCGCCTGGG CGCGCTGGGT GCGGCCGTGG ACGCTGATGG CGTGGATCTT CCTGACGCTC
GGCATCGCGA TGGGCTCGTA TTGGGCTTAC TACGAACTCG GCTGGGGCGG CTGGTGGTTC
TGGGACCCGG TCGAGAACGC CTCACTGATG CCATGGCTCG CCGGCACCGC GCTGCTGCAT
TCGGCGCTGG TGATGGAGAA GCGCAACGCG CTGAAGGTCT GGACCATCCT CCTCGCGATC
CTGACGTTCT CGCTGTCGCT GCTCGGCACC TTCCTGGTGC GCTCCGGCGT CTTGACCTCG
GTGCACACCT TCGCCACCGA TCCGTCGCGT GGCGTGTTCA TCCTGGTAAT TCTGTGCGTC
TTCATCGGCG GCAGTCTCGC GCTGTTCGCC TGGCGCGCTT CGGCGTTGAA GCAGGGCGGG
CTGTTCGCAC CGATCTCCCG CGAGGGCGCG CTGGTGCTGA ACAATCTGTT CCTCACCACC
GCCTGCGCCA CGGTGTTCGT CGGTACGTTG TATCCCTTGG CGCTCGAAGT CGTCACCGGT
GACAAGATCT CGGTCGGCGC GCCGTTCTTC AATCTCACCT TCGGGCCGCT GTTCGTGCCG
CTGATGCTGG CGATGCCGTT CGGGCCGCTG CTGGCGTGGA AGCGCGGCGA CATCGTCGGC
GCGGCGCAGC GGCTGATCGC GGCCGGCGTC GTGGCGCTGC TGACGGTCGC CCTGGTCTGG
GCCTGGACCA CCGGCGGCCC GGTGCTCGCG CCGCTGGCGA TCGGGCTCGC GGTGTTCGTG
ATCGCCGGCG CGCTTGCCGA CATCGCCGAA CGCATCGGAC TGTTCCGCAA CCCGCTGTCG
ATCTCCACGC GCCGTGCGCG CGGGCTGCCG CGCTCGGCCT GGGGCACGAT GTTCGCCCAT
GCCGGCGTCG GCATGGCGCT GATCGGCATC GTCTGCGAGA CCACCTGGAA CAGCGAGCAC
ATCGCCGCGA TGAAGGAGGG CGATACAGCG CGGATCGCCG GCTACGAACT CAAATTCGAA
GGCGCGATGC AGCGCCAGGG GCCGAATTTT CGCGAATTGG AGACGCGCTT CTCGATCAGC
GAGGGCGGCC AGCCGGTCGG CGTCATGACG CCGTCGAAGC GCAGCTTCAC CACCCGCGGC
ACCTCGACCA CCGAGGCGGC ACTGCTGACC CGTGGCTTCA GCCAGCTTTA CGTCTCGCTC
GGCGAGATCG ACGCCGCGGG CGCGGTGACG GTGCGGATCT ATCACAAACC GATGGTGCTG
CTGATCTGGT TCGGCCCGCT GCTGATGGCG TTCGGCGGCC TGTTGTCGCT GTCCGACCGT
CGCCTGCGCG TCGGCGCACC GAAACCGGCC AAGCCGCAGC GTACGCTGCA GCCGGCGGAG
TAG
|
|---|
| Protein sequence | MIAEAGHYAL VLALALALIQ STVPILGARL NDGGLMNVAR STALAQFAFV AASFGALVYL
NVTSDFSVLN VYENSHSAKP LLYKITGVWG NHEGSMLLWV AILALFGGLV AAFGNNLPLS
LRAHVLAVQA WVASAFYLFI LITSNPFLRI PNPPIEGRDL NPVLQDIGLA VHPPLLYLGY
VGFSISFSFA AAALLEGRLD AAWARWVRPW TLMAWIFLTL GIAMGSYWAY YELGWGGWWF
WDPVENASLM PWLAGTALLH SALVMEKRNA LKVWTILLAI LTFSLSLLGT FLVRSGVLTS
VHTFATDPSR GVFILVILCV FIGGSLALFA WRASALKQGG LFAPISREGA LVLNNLFLTT
ACATVFVGTL YPLALEVVTG DKISVGAPFF NLTFGPLFVP LMLAMPFGPL LAWKRGDIVG
AAQRLIAAGV VALLTVALVW AWTTGGPVLA PLAIGLAVFV IAGALADIAE RIGLFRNPLS
ISTRRARGLP RSAWGTMFAH AGVGMALIGI VCETTWNSEH IAAMKEGDTA RIAGYELKFE
GAMQRQGPNF RELETRFSIS EGGQPVGVMT PSKRSFTTRG TSTTEAALLT RGFSQLYVSL
GEIDAAGAVT VRIYHKPMVL LIWFGPLLMA FGGLLSLSDR RLRVGAPKPA KPQRTLQPAE
|
|---|
| |