| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1983 |
|---|
| Symbol | |
|---|
| ID | 4022465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2219981 |
|---|
| End bp | 2220388 |
|---|
| Gene Length | 408 bp |
|---|
| Protein Length | 135 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637962176 |
|---|
| Product | gene transfer agent (GTA) orf |
|---|
| Protein accession | YP_569119 |
|---|
| Protein GI | 91976460 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5437] Predicted secreted protein |
|---|
| TIGRFAM ID | [TIGR02126] phage major tail protein, TP901-1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.516459 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGCAC AGAAGGGCAA GGATCTGCTG GTCAAGATCA AGGACGGCGC GACCTACGTC
GCCGTCGCCG GCTTGCGCAG CCGCAAGATC GCGTTCAACG CCGAGCTGGT CGACATCACC
CACGCCGAAT CCGCCGATCG CTGGCGCGAG CTGCTGGCCG GCGCCGGCGT CCGCCGCGCC
TCGATCTCCG GCCGCGGCCT GTTCAAGGAC GCCGCCTCCG ACGCGCTGGT GCGGCAGGCG
TTCTTCAACG GGCTGATCAG CGATTGTCAG GTGATCGTTC CCGATTTCGG CACGATCAGC
GGGCCGTTCC AGATCGCCGG CCTCGAATTC GCCGGCGAGC ACAATGGCGA GGTGACGTTC
GACGTCACGC TGGAGAGCGC CGGCGCGCTC GGCTTCGCAA CCTTGTGA
|
|---|
| Protein sequence | MGAQKGKDLL VKIKDGATYV AVAGLRSRKI AFNAELVDIT HAESADRWRE LLAGAGVRRA
SISGRGLFKD AASDALVRQA FFNGLISDCQ VIVPDFGTIS GPFQIAGLEF AGEHNGEVTF
DVTLESAGAL GFATL
|
|---|
| |