| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1929 |
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| Symbol | |
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| ID | 4022411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 2166406 |
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| End bp | 2168277 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637962122 |
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| Product | methylmalonyl-CoA mutase |
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| Protein accession | YP_569065 |
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| Protein GI | 91976406 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1884] Methylmalonyl-CoA mutase, N-terminal domain/subunit |
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| TIGRFAM ID | [TIGR00641] methylmalonyl-CoA mutase N-terminal domain
[TIGR00642] methylmalonyl-CoA mutase, heterodimeric type, beta chain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.102484 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCTG CAAGCAAGGA GCTGCCGCTC GCCGCCGATT TCGCTCCGGC CGGCTATGAC
GACTGGCGCA AGCTGGTCGA CGGCGTGCTG AAAGGCGCGT CGTTCGAGAA ACTGGTCGGC
AAGACCTATG ACGGCGTCAA GATCGACCCG ATCTATCCGC GGGCGCGCGA CGCGGCGCCG
GTGGCCGGCC GTGGTCCCGC GGAGCCGTGG CAAATCATGC AGCGGATCGA TCATCCGGAC
GCCGCGCAGG CCAATGCACA GGCGCTGCAG GACCTCGAGA ATGGCGCAAC CGGGCTGACG
CTGGTGTTCG CCGGCAGCGT CGGCGCGCGC GGCTTCGGGT TGCCCGGCAC CAAAGACGCC
GTCGCCAAGG CCCTGGAGGG CATCCACCTC GACGCCGGCA TCGCGATCGA GTTGCAGTTC
CCGCCGCAAT CCTGCGACGT GGTTCGCCAT CTCGTCGACC TGATCAAGAG CCGCGGCACC
GATCCGGCCG CCTGCGACAT CCGCTTCGGC ATCGACCCGC TGGGCGCGCG CGCCGTGCAG
GGATCGAGCC CGACCGACTG GAGCGAGATC GCGCGTGGTG TCTCCGAGGT CGCCACTGGC
CTCGCAGGCA CCGGCTTCAA GGCGCCCTTC CTGGCTGCCG ACGGCCGCGT GATCCACGAC
GCCGGCGGCT CGGAAGCGCA GGAGCTGGCT TACGTGCTCG CGGCCGGCGT CGCCTATCTG
CGCGCGCTGG ACAGCGCGGG CGTGCCGCTC GATCAGGCGC GCAGCATGAT CTATGCGCGG
TTCGCGGCGG ATGCCGATCA GTTCCTGACG CTCACGAAAT TCCGCGCCCT GCGGCTGTTG
TGGGCGCGGA TCGAGCAGAG CTGCGGCCTC GCGCCGAAGC CGCTGTTCGT CGCGGCGGAA
ACCGCGTGGC GAATGCTGAC CCAGCGCGAT CCGTCGGTGA ACATGCTGCG CGCGACGGTC
GCGACCTTCT CGGCCGCGCT CGGCGGCGCC AATTCGGTTC TGGTGCTGCC GCACACGCTG
GCGATCGGTC TTCCCGATGC GTTTGCGCGC CGCGTCGCCC GCAACACTCA ATTGATCCTG
CGCGAAGAGT CCAACCTCGA CAAGGTCGCC GACCCCGCCG CCGGCTCCGG CGGCATCGAG
GCCTTGACCC GCGAGCTGTG CGACGCGGCG TGGCTGCAGT TTCAAGAGAT CGAGAATGCC
GGCGGCGCGT TCGCGGCGCT CAGCGGCAAT GCGATCCAGC CCAAGGTGGC GGCGACACGC
GCCGCGCGCG ACAAGAACAT CGGCAAGCGC CGCGACGTCC TGACCGGCGC CAGCGAATTT
CCGAACCTGC ACGAGGCGCG GGCGACCGTG CTCGACGCCA AGCCGGTCGC AGCGCCGTCC
GACAGCGAGG CCAAGATCAG TTTCGAGGCG CTCGCGCCGA TCCGGATCGC GAAGCCATTC
GAGACCCTGC GCGACAAGTC CGACGCCCGC CTCGCCGCCA AGTCAGCGCG GCCAAAAGTG
TTCCTTGGCA ATCTCGGCAG CGCGGCCGAT TTCACCGCGC GCGCCACTTT CGCGAAGAGC
TTCTTCGAGA CCGGCGGCAT CGAGGCGATC GACAGCGACG GCTTCACCGA TCCGCAGGCG
CTGGCGGAGG CCTTCAAGGC TTCCGGCGCA TCGTTTGCGT GCCTGTGCTC ATCGGACAAA
GCCTACGCGG CTCATGCCGC TCCGGCCGCG CAGGCGCTGC GCGACGCGGG CTGCGCGCGG
ATCTATCTCG CAGGCCGTCC AGGCGAGCAG GAAGCAAGCT TGCGCGATGC CGGCGTGCAG
GACTTCATCT TCGCCGGCAG CGAAGCGCTG GCGATGCTGA ACGACGCCTG GCAGCGAATC
GAGGCGGCAT GA
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| Protein sequence | MSSASKELPL AADFAPAGYD DWRKLVDGVL KGASFEKLVG KTYDGVKIDP IYPRARDAAP
VAGRGPAEPW QIMQRIDHPD AAQANAQALQ DLENGATGLT LVFAGSVGAR GFGLPGTKDA
VAKALEGIHL DAGIAIELQF PPQSCDVVRH LVDLIKSRGT DPAACDIRFG IDPLGARAVQ
GSSPTDWSEI ARGVSEVATG LAGTGFKAPF LAADGRVIHD AGGSEAQELA YVLAAGVAYL
RALDSAGVPL DQARSMIYAR FAADADQFLT LTKFRALRLL WARIEQSCGL APKPLFVAAE
TAWRMLTQRD PSVNMLRATV ATFSAALGGA NSVLVLPHTL AIGLPDAFAR RVARNTQLIL
REESNLDKVA DPAAGSGGIE ALTRELCDAA WLQFQEIENA GGAFAALSGN AIQPKVAATR
AARDKNIGKR RDVLTGASEF PNLHEARATV LDAKPVAAPS DSEAKISFEA LAPIRIAKPF
ETLRDKSDAR LAAKSARPKV FLGNLGSAAD FTARATFAKS FFETGGIEAI DSDGFTDPQA
LAEAFKASGA SFACLCSSDK AYAAHAAPAA QALRDAGCAR IYLAGRPGEQ EASLRDAGVQ
DFIFAGSEAL AMLNDAWQRI EAA
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