Gene RPD_1913 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1913 
Symbol 
ID4022395 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2149390 
End bp2150505 
Gene Length1116 bp 
Protein Length371 aa 
Translation table11 
GC content61% 
IMG OID637962106 
Producthypothetical protein 
Protein accessionYP_569049 
Protein GI91976390 
COG category[S] Function unknown 
COG ID[COG5330] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.171289 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.959449 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTCAA AATCGGCACT ATCCGCCGCC AATCTTCTCG ATGAACTGCA ATCCACGCTC 
GCGCACGGCA CGGTCGCCCG GCGCGTCGAA ACATTGCGCC GGGTCACCGA TCTGTATCTC
GACGGCGAGG TCGACTACAC CGAGGATCAG ATCTCGGTAT TCGACGATGT CTTCAACTGC
CTGGTTCGGA ACATCGAAAC CAACGCAAAG GTCCTGCTGG CCCAGCGGCT CGCCCCGGTG
AACGCGCCGC CGCGGATCAT CCATCATCTC GCCTTCGAGG ACATGATCGA GATCGCGGCG
CCGGTGCTCA CGCAGTCCGA ACAGCTCGAC GACGCAACGC TGATCGCCAA TGCCCGCACC
AAGGGACAGG GCCATATGAT GGCGATCTCG AACCGCAAAT CGCTAAGTGG CGCGGTAACC
GACGTGCTCG TCGAGATCGG CAATCAGCAG GTGGTGCAGA GCACCGTCAA GAATCCCGGC
GCCGAATTCT CCGACAACGG CTATTCGATG CTCGCCAGAC GAGCCGAGCA GGACGACGAC
CTCGCCACCG AACTCGGCAA GCGCGCAATC CCGCGCGCAC AATATCTCAA GCTGATCGCC
ATCGCGTCGG CCTCGGTGCG GACGAAGCTC AAGGCGGCGA ATCCGACCGC CGCCTCCGAG
GTGTCGAGTG CGGTGAAGAA AGCGACTTCG CTGGCGCGCT CTGCTCACTC GACGGTGAGC
CGGCAAACCA ACATCGCCCA TGGCTTGGTA CGTGCCCTGT TCGAGGACGG CCGCATCAAC
GAAGACCAGA TATTCCTCTT CGCCAACGAA CAGAAGTTCG ACGAGATCAA CCAAGCGATC
GCCTGCCTCG CAGGGACATC AGTGGAAACC GTCGAATCAA TGATGGTCGA GTCCCGCGAC
GAAGGCCTGC TGATTCTCGC CAAGGTCTGC AACTTCTCCT GGTCCACGGT GAACGCGATC
ATTCATATGC GCGACGAACT GACCGGGACC AGATCGGGCG ATCTCGAGGA ATGTCGCCTC
ACCTATGATC GGTTGCGCAA TTCGACTGCG CAGCAGGTGC TGCGCTTCCA CCGTATGCAG
CAATCGACCG CGACCGCAAA GCCGCCGGCC GCCTGA
 
Protein sequence
MSSKSALSAA NLLDELQSTL AHGTVARRVE TLRRVTDLYL DGEVDYTEDQ ISVFDDVFNC 
LVRNIETNAK VLLAQRLAPV NAPPRIIHHL AFEDMIEIAA PVLTQSEQLD DATLIANART
KGQGHMMAIS NRKSLSGAVT DVLVEIGNQQ VVQSTVKNPG AEFSDNGYSM LARRAEQDDD
LATELGKRAI PRAQYLKLIA IASASVRTKL KAANPTAASE VSSAVKKATS LARSAHSTVS
RQTNIAHGLV RALFEDGRIN EDQIFLFANE QKFDEINQAI ACLAGTSVET VESMMVESRD
EGLLILAKVC NFSWSTVNAI IHMRDELTGT RSGDLEECRL TYDRLRNSTA QQVLRFHRMQ
QSTATAKPPA A