| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1765 |
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| Symbol | rpsD |
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| ID | 4022247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1981253 |
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| End bp | 1981870 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637961959 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_568902 |
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| Protein GI | 91976243 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.573109 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.398636 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACAAAGC GCAGTGAAGC CAAGTATAAA ATCGACCGCC GGATGGGCCA GAACATCTGG
GGCCGCCCGA AGAGCCCGGT CAACCGCCGC GAATACGGCC CCGGTCAGCA CGGCCAGCGC
CGCAAGGGCA AGCTGTCCGA TTTCGGCGTG CAGCTGCGCG CCAAGCAGAA GCTCAAGGGC
TATTACGCCA ATATTTCCGA GCGTCAGTTC CACGCCATCT ACGTCGAGGC GACCCGCCTG
AAGGGCGATT CGGGCGAGAA CCTGATCGGC CTCCTGGAGC GCCGGCTCGA CACGGTCGTG
TACCGCTCGA AGTTCGTGTC GACGATGTTC GCGGCGCGGC AGTTCATCAA TCACGGCCAC
ATCAAGGTCA ACGGCAAGCG CGTCAACATC TCGAGCTACA AGGTTCGGGT CGGCGACGTG
ATCGAGGTCA AGGAAGCCTC GAAGCAGCTC GCGATCGTGC TCGAAGCGAA CCAACTCGCC
GAGCGCGACG TGCCGGACTA CATCGACGTC GATCATAACA AGATGACCGC CAAGTTCGGC
CGCATCCCGG CGCTCTCCGA CGTGCCGTTC GCGGTGCAGA TGGAGCCGCA TCTGATCGTC
GAATTCTATT CGCGCTGA
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| Protein sequence | MTKRSEAKYK IDRRMGQNIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGV QLRAKQKLKG
YYANISERQF HAIYVEATRL KGDSGENLIG LLERRLDTVV YRSKFVSTMF AARQFINHGH
IKVNGKRVNI SSYKVRVGDV IEVKEASKQL AIVLEANQLA ERDVPDYIDV DHNKMTAKFG
RIPALSDVPF AVQMEPHLIV EFYSR
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