| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1148 |
|---|
| Symbol | |
|---|
| ID | 4021624 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1305132 |
|---|
| End bp | 1306433 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637961340 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_568287 |
|---|
| Protein GI | 91975628 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0510844 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGCCG AGGTTCGCTG GCCGGAATCG CTGTGGCACG CGGTGACGCC GCCGGGGCCG
GCATTGCCCG AATTGCGCGG CACTGAGGCG GCCGACGTGA TCGTGATCGG GGCGGGCTTT
AGTGGTCTGT CGACCGCGCT GCATCTGCGC GAGGCCGGCG TCGACGTCGC CGTGATCGAG
GCCGCCGAAC CGGGGTGGGG CGCCTCCGGC CGCAACAACG GCCAGGTGAT CCCGACGCTG
TCGCGGCCGG ATCCCGAAGA CATCGTCGCC AAACACGGCG CCGCCGGCGA GCGGTTGGTC
GGGCTGATTC GCGACAGCGC CTCGATTCTG TTCGACGTCG CCAAGCGGCA CGCGATCGAC
GCCGAGCAGG AGCAGAACGG CTGGGTGCAG CCGGTGCATT CGCCCGGCCG GATCAAGATC
GCCGAACGCC GCGTCCGGCA ATGGTCGAAA TTCGGCGCGC CGGTCGAGTT GCTGTCGCGT
GACCAGACCC GCGAGATGCT CGGCTCCGAC GCCTGGTTCG GCGGCTTCTG GAACAGGACC
GGCGGCCACA TCAATCCGCT CGCATTGGCG CGCGGGCTGG CACGCACCGT GCTGGCGCAG
GGCGGGCGTA TTTTCGCGCG CTCGCCGGCG CTGAGCATCG AGCGGCGCGG CGATCGCTGG
ATCGTCAAAA CCGCGCAGGG CGAAATCAGT AGTCGCGCGC TGGTGGTCGC CAGCAACGCC
TACACCGGTG AATTCTCGAA AACGCTGGCG CCGTCGCTCG CCGGCGAAGT GATGCCGGTG
CGATCGTGGC AGATGGCGAC GCAGCCGCTC GGCGACAATG TGCGCAAGAG CATGATCCCG
GGCCGTCAGG CGATGTCCGA CACCCATGGC GAGCTGATCT TCGGCCGCTT CGATGCGCGC
AACCGCTTCG TCACCGGCGG CGCGATCATC CGGCCGTTCA ATCAGGCCGC GACGCTGAAG
GCGCGGGTCG GCAAGCGGCT GCAAGGTCTG TGGCCGCAGA TCGGCGAGGT GAAGTTCGAC
TATGTCTGGA ACGGCTTCAT CGGCATGACG ACCGACTACC TGCCGCACAT CCATCGCCTC
GGTTCCAATG CCTATGGCTG GACCGGCTGC AACGGCCGCG GCGTCGCGCT GTCGATCGCG
CTCGGCGACG AGCTGTCGAA GGCGGTGCGC GGTGTGCCCG ACAACGAACT GGCGCTGCCC
TTCACCGAGC CGACCCCGAT CCGGGCGAAC GAACTGCTGC GCCCGTTCGC GCCGCTGATG
ATGGTGCTGT ACCGGCATCG AGACAGCAAG GAGATCGCGT AG
|
|---|
| Protein sequence | MSAEVRWPES LWHAVTPPGP ALPELRGTEA ADVIVIGAGF SGLSTALHLR EAGVDVAVIE
AAEPGWGASG RNNGQVIPTL SRPDPEDIVA KHGAAGERLV GLIRDSASIL FDVAKRHAID
AEQEQNGWVQ PVHSPGRIKI AERRVRQWSK FGAPVELLSR DQTREMLGSD AWFGGFWNRT
GGHINPLALA RGLARTVLAQ GGRIFARSPA LSIERRGDRW IVKTAQGEIS SRALVVASNA
YTGEFSKTLA PSLAGEVMPV RSWQMATQPL GDNVRKSMIP GRQAMSDTHG ELIFGRFDAR
NRFVTGGAII RPFNQAATLK ARVGKRLQGL WPQIGEVKFD YVWNGFIGMT TDYLPHIHRL
GSNAYGWTGC NGRGVALSIA LGDELSKAVR GVPDNELALP FTEPTPIRAN ELLRPFAPLM
MVLYRHRDSK EIA
|
|---|
| |