Gene RPD_1034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1034 
Symbol 
ID4021510 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1185127 
End bp1186206 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content66% 
IMG OID637961226 
Productspermidine/putrescine ABC transporter ATP-binding subunit 
Protein accessionYP_568173 
Protein GI91975514 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.330861 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGAACA TCAGAACCAA CGGCGCTGCA CTTGTCCTGA AAGATCTCGC GAAGACCTAC 
GGTTCGCTCG CCGTGGTCCG GGATGTGTCG CTCACCGTCG CGCCGGGCGA GTTCGTCACC
TTTCTCGGGC CGAGCGGTTC GGGCAAGACG ACGACGCTCA ATCTCATCGC CGGATTCACT
GAGGCCAGCG CCGGCCGGAT CACGCTCGAC GGACGCGATC TCGGCAATGT GCCGGCGCAT
CAGCGTGGCA TCGGCGTCGT GTTCCAGAGC TACGCGCTGT TCCCGCATAT GACGGTGCGG
CAGAACATCG CCTATCCGCT CGAACAGCGC CGACCGCGGA TGGACCGCAA GGCGATCGAG
ACGCAGGTCG GCGACGTCCT GCAATTGGTC GAGATGGCCG GATACGCCGA CCGCCGGCCG
CATCAATTGT CCGGCGGCCA GCAGCAGCGC GTCGCGCTCG CGCGTGCGGT GGTGTTCGAA
CCGAAACTGC TGTTGCTCGA CGAGCCGCTC GGCGCGCTCG ACAAGAGGTT GCGGGAAAGC
CTGCAGCTCG AGCTGCGCCG CATCCACCGT GAGCTGGGCG TCACCGTCAT CTTCGTCACC
CACGACCAGG ACGAGGCGAT GACGCTGTCG GATCGCATCG TGGTGTTCAA CGAGGGCCGC
ATCGAGCAGG TCGGCACGCC GCAGCAGCTG TACGGGCAGC CGGCCACCGA GTTCGTCGCC
CGCTTTCTCG GCGACTCGAA CATCTTCCGC GGCCGGGTCG AGGACCAGCA TCTGAATTGT
GGCGCGTTCA ACATCCGGCT GCCCGCGCCG GCCACGCCCG GTCCGCTGTC CGCGATGGTG
CGCCCGGAAA AAATGCGGGT GAAGAAGGAC GTCGCCGGCG CAGGCGAGGA CGGCGTTGCC
GCCACGCTCA CCGACGTGAC GTTCTCGGGC TCGACCTGGC GGGTCGAGGG GCATGATTCG
GATGGCCGGA CCTTGTTGGC GCGGGTCGCC GACGGTTCGA CCCTCCACAT CGGCGAGATG
GTCAATTTCG TCTGGTCCGT CGAGGACGTC CGTATCGTCG CCAGCGAAGC CCGGCCATGA
 
Protein sequence
MTNIRTNGAA LVLKDLAKTY GSLAVVRDVS LTVAPGEFVT FLGPSGSGKT TTLNLIAGFT 
EASAGRITLD GRDLGNVPAH QRGIGVVFQS YALFPHMTVR QNIAYPLEQR RPRMDRKAIE
TQVGDVLQLV EMAGYADRRP HQLSGGQQQR VALARAVVFE PKLLLLDEPL GALDKRLRES
LQLELRRIHR ELGVTVIFVT HDQDEAMTLS DRIVVFNEGR IEQVGTPQQL YGQPATEFVA
RFLGDSNIFR GRVEDQHLNC GAFNIRLPAP ATPGPLSAMV RPEKMRVKKD VAGAGEDGVA
ATLTDVTFSG STWRVEGHDS DGRTLLARVA DGSTLHIGEM VNFVWSVEDV RIVASEARP