| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1007 |
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| Symbol | |
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| ID | 4021482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1143010 |
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| End bp | 1143963 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637961198 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_568146 |
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| Protein GI | 91975487 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.163323 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0478945 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGG TGTGGATCGA GCTAACCGCC CTGTCCCGCG TCACGACCAC CATCGTTTCG
GCCAGAACGC GCTTGGCGCG CGTTCGGATT GCGGCCCTCA ATGGCGCAGC TTTTGGCTTG
GCGATGGTTG GATTCGCCGA CTCCCTTGTC GCTGCCGAAA AAGCCGAGCC TGCGCCGTCC
GGCGTGCAGG TCACCGTCGC CAAGGCGACC AACGCCTGCT TCTCAGACAT GGTGCGGATC
ACCGGCTTCG TGGTTCCGCG CAAGGAAGCG GTGGTGATCG CCGACAGCGA CGGCAAGGTG
ACCGATGTGC TGGTGCGCGA GGGCGATGTC GTCACCGACA ACCAGGAGCT GGTGCGCATC
ATCGGCGCGA CCGGGCCGAA ATCGCTGCGC GCGCCGGCCG CGGGACTGAT CACCGAGCTG
CGCACCATCG CCGGCGCGCC GGCTTCGCCG CTGGCCGGTC CGGTAGCGCG GATCGCCGTC
AACAACGAAC TCGAGATCGA AGCCGAGGTG CCGAGCATCC ACGCGCTCAA GGTCGCGCCC
GGCGCCCCGG CGCGCATCGG CCGCGACGAC GGCTCGGATC TGGCCGGCAA GGTGCGGTTG
ATGGCGCCGC AGATCGACCG CAAGACCCAG CTCGGCAAGG TCCGGCTGTC GGTCACCAAT
TCGCCTTCGC TCAAGGTCGG CATGTTCGTC CGGGCGACGA TCGATGCGCG GCGGAGCTGC
GGCGTGGCGA TCCCGCGGCA GGCGATCGAT CACCTCAAGG TGCAAGTCGT GAAGGGCAAC
ACGGTCGAGA CCCGCAAGGT CAAGGTCGGT CTGGTGTCCG ATAGCAGCAT CGAAATTCTC
GAGGGCGTGC GCGAGGGCGA GGTTGTCGTC GCCGATGCCG GCACCTCGTT GCACGACGGC
GATCTGATCA AGCCGATCTT CCAGGACGAA TTCGACCGAT CGCGAGTACG CTAA
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| Protein sequence | MTKVWIELTA LSRVTTTIVS ARTRLARVRI AALNGAAFGL AMVGFADSLV AAEKAEPAPS
GVQVTVAKAT NACFSDMVRI TGFVVPRKEA VVIADSDGKV TDVLVREGDV VTDNQELVRI
IGATGPKSLR APAAGLITEL RTIAGAPASP LAGPVARIAV NNELEIEAEV PSIHALKVAP
GAPARIGRDD GSDLAGKVRL MAPQIDRKTQ LGKVRLSVTN SPSLKVGMFV RATIDARRSC
GVAIPRQAID HLKVQVVKGN TVETRKVKVG LVSDSSIEIL EGVREGEVVV ADAGTSLHDG
DLIKPIFQDE FDRSRVR
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