| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1002 |
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| Symbol | |
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| ID | 4021477 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 1132406 |
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| End bp | 1133329 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637961193 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_568141 |
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| Protein GI | 91975482 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.677003 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.658036 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCACG ATGTCGCGAC CGGCCATTCC CGCAGATTGT TCAGGCGCGG CGCCAGCCTG
TTGGCGCTCG GCGCGATCTG CGCGACCGCG CTGCCTGCGC GCGCCGCCGA GGAAGCTAAC
GCCGACGCCG TCAAAGGACA GGCGGTCACG GTGCTGAAGG CGACCAAGTC GTGTTTCCCG
GCGATCGTCG AAGTCTCCGG CTTCCTGATC CCGCGCGATG AAGTCTCGGT CCGTCCCGAC
CGCCCCGGCG CCAAGGTGAC CGACGTGACG GTCGATGCCG GCGAGATCGT CGCGCAGGGC
CAGACGCTGG CGAGGCTCGC CGGGCCCGAG GGCGGCTCCA CCACGATCCA GGCGCCGGTC
GCCGGCCTCG TCTCCAGCTC GACCGCGGTG ATCGGAGCGC CGGCCTCGGC CAAGGGGGAC
GCGCTGTTCA CCATCATCGC GCGCGGCGAA TTCGATCTGG TCGGCCAAGT GCCGACCCGC
AATCTGGCGC AGCTCGCGAC CAACCAATCC GCCGCGGTCA AGATCGTCGG CGTGCCCGAC
GAGATCACCG GCCGGGTGCG GCGCGTGTCG GCGACCGTCG AGCCGAACAG CCAGCTCGGC
AACGTGTTTG TCGGAATCAG TTCGACCAAG CGGCTGCTGT CCAACGCGTC CGGCCGCGCG
ATGATCAAGA CCGGCGAGAG CTGCGGCATC TCGGTGCCGC TGACCGCCGT GCTCTACAGC
TCCGCGGGCA CCGTCGTGCA GGTGGTGCGT CGCCAGACCG TCGAGACCAA GCGCGTCGAA
ATCGGGCTGA TGAACGGCGG CAATGTCGAG ATCCGCGAGG GCCTGCAGGA GGGCGACGTT
GTGGTCGCCC GCGCCGGCGC GCTGCTGCGC GAGGGCGATA CGGTGCGGCC GGTGATCGCC
GCGGCGCAAT CGACCGAGAA GTAG
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| Protein sequence | MSHDVATGHS RRLFRRGASL LALGAICATA LPARAAEEAN ADAVKGQAVT VLKATKSCFP
AIVEVSGFLI PRDEVSVRPD RPGAKVTDVT VDAGEIVAQG QTLARLAGPE GGSTTIQAPV
AGLVSSSTAV IGAPASAKGD ALFTIIARGE FDLVGQVPTR NLAQLATNQS AAVKIVGVPD
EITGRVRRVS ATVEPNSQLG NVFVGISSTK RLLSNASGRA MIKTGESCGI SVPLTAVLYS
SAGTVVQVVR RQTVETKRVE IGLMNGGNVE IREGLQEGDV VVARAGALLR EGDTVRPVIA
AAQSTEK
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