| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0969 |
|---|
| Symbol | |
|---|
| ID | 4021444 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 1096707 |
|---|
| End bp | 1101167 |
|---|
| Gene Length | 4461 bp |
|---|
| Protein Length | 1486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637961160 |
|---|
| Product | cytochrome P450-like |
|---|
| Protein accession | YP_568108 |
|---|
| Protein GI | 91975449 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2124] Cytochrome P450 |
|---|
| TIGRFAM ID | [TIGR01413] Dyp-type peroxidase family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCACGC TCAAGTACTA TGACGCGATC AAGAAGGCCC AGTCCGACGC AGCCTCCGCT
CCTCCTCCGC CGCTCGTCCC GTTCGATCTC GACGATCTCG GCGCCGACAC CACGCTGAAG
CGCTGGAGCA CCACGGCGTT CAGCTATGTG TTGCGTGGCG CGCTGTATCT GTTCAGGGAA
TTCTGGCCGA ACCCGCAATT CGGTCGCCTC GTGATCGTCA CCCGCGAAAC CGACGTCCGC
GAGGTGTTGG CGCAGCCCGG TGTTTTCGAG GTGCCCTACG GGCCGGAGAT GACCGAACTC
GCCGGCGGCA CCAATTTCGT GCTCGGCCTC GAAGGTCCGG AGCATGACCG GCAGAACGCC
ATCATCCGCA GCGTGCTGCG CCCGACCGAT CTCGACCGCA TCAAGAGTCT CGCCCGCCAT
TACGCGCAGA TCCTGATCGA CGGCTCCGGC GGCCGGATCG ACGTGATGAA GGACCTGATG
ACGCGGGTCG CCACCGAGAC CTGCTGCGGT TATTTCGGCC TCGCTCCGGA GGACCCGGAC
GCGTTCGCCG AATGGGCGAT GTCGATCTCG GCGCTGCTGT TCGCCGATCC GTTCGGAAAT
GCCGCCACCC GTCGCCTTGC GCTGAATGGC GCGGCGCAGG TCCGCGAGGT GATCGATCGC
GCGATCGCGC GCGCAAAGGC GGCACCGGAG ACCGACACCG TGGTCGGCCG GTTGGTCGCG
CAATCCAGCG ACGGCGCAGC GACCGAAGGC GAGATCCGCG CCATTCTGGT CGGGCTCGTC
ACCGGTTTCA TCCCGACCAA CACGCTCGCC GCCGGCAAGA TTCTCGAAGA GCTGCTGCGC
CGGCCCAAGG TGTGGGCGGA AGCGATCGAC TGCGCCGGCC GTGACGACAG CGCCGGGCTC
GAAGCGATCC TGCTCGAAGC CGGCAGGCTC AATCCCGCTC TGGCGCCGGG GCAGTGGCGC
TACGCGACGA AAGACGGCGT CATCGCCCAC AACACCTCGC GGCAGCGCAA GGTCCGCGCC
GGCTCGGTGC TGATGGTGGC GACGATGTCG GCGCTGCGCG ACAAGCGGGC GTTCGTGTCC
GCGGGATCGT TCCGCGCCGA CCGGCCGAAC CAATCGAGCC TGATGTTCGG CGACGGTGTT
CATGCCTGCC TCGGTATGCA TGTTGCGATC GCGCAGATCA CCGAAGTCTT TCGCGTGCTG
CTGAGGCAGC CGAATTTGCG CAGGGCCTCC GACAGATCGG GCGCGATCGG CTGGGTCGGT
CCGTTCCCGC GCCGGCTCGA CATGGAGTTC GAGCCGAAGA TCGCGCCGCA GACGCAGAAC
ATGATCGTGA TCTGCGCGCC GGTTCGTCCC GACACCGATC TCGACGCCCT GCGCGCGCAG
ATCACCGCGC TCGGCAATCC GGCGCGGCCG GACGTCGTCG CCGCGCTGCA GGCGACAGGA
CTGATCCACT TCGCCTCGAT GACGCTGATC GACGCCGGCA CGCCGGATCA GCCCGCGCCG
CATCTGTTGC TCGAACTCAA TGTCGACGGC TCGCCGGAGA GTGCGATCCG CGCCGTCGTG
AACGAGGCGG GCGAATGGCT GGCGCCGATC TTCGCGCACG CCGACGAACG CGCCGGCGCC
GCGCTCGGCG ACATCCTCCG CCGCAACATG CTCGATCTGC AGACGAAGCC ATGGGGCGCG
ATCGGGTTGA ACTTCAACGG CACGCCGGAA TTCGCCGTCG CCGACATTGT GCGGCAGCGC
GAGCTCGCGC GTTTCACCCA GGACGCGCTC GAGGCGTATC TCGAGAACCA TGCCGGCCTC
GGCAGCCGCG CGATGGTCGC GCTCGGCTAT GTCCGGAAGC TGATCCGGCA GGATCCCGCG
CTGAAGCGGA TCATCGACCA ATCGCCGGAC TCGACCCGCA AGGCCCGGCT GCAGGCGTTG
TTCACGCGCG GCGCTGCATT CACCGACTAT CTGATCCGGC CGAGCCGGCG GCGTTTGCAG
ATCTCCGACT GGGTCCCGCG CTCCGGCGCC GAGTCGCTGC TGGCGATGTT CAACTCGACC
ACGTTCCGGT GGATCGGCGC GATCGTCATC GGCCTCGTGC TGATCGCGAG CCAGGCGATC
TATTTTGCGA TCGAGCCGTA TTCGGACGCG ACCTATATCG GCCGCATCGC GCTGGCGGTG
GTCGGCGGTT TGCTGCTGGT AGCGCTGAAG CTCGCCGCGC TGGCCGGCCT GTTCCTGCTG
GTGTTGCGCT ATTACGAAAA CGGCGACGTT CCCGACGACA GCGATCCCGA CATCGCCAGG
GTTCGCGAGA TCGCCGCCAG CGAAAACCAT CCCGGCTTCG TGCAGAACCA CATCACCGCC
GTCACTGCGC TGAAGCCCGG CGCGTTTCGC AAGCTGACGC TTGCGCTGTC GCTGTGGGGC
ATCAAGGAGC TGGTGACGAA TTTCTACCGG CCCGGCTTCG TGCTCAACAT GGGCACCATC
CACAAGGCCA AATGGTTCAG GCCGCCCGGC GCCGACAAGC TGATCTTCCT CGCCAATTAC
GATGGAAGCT GGGAGAGCTA TCTCGAAGAC TTCGTGATGA AGGCCCATGC CGGCCAGTCG
GCGGCGTGGA GTAATGGCGT CGGCTTTCCG CGCACCCGCT TCCTGATCTA CGACGGCGCG
CAGGACGGCG ACCGCTTCAA GCGCTGGGTG CGGCGGCAGC AGGTGCCGAC GCAGTTCTGG
TTCAACCGCT ATCCGCGCCT CACCACCGAC GAGATCCGCC GCAACGCGCT GATCCATGAC
GGGCTGGTCC GCGCCTCGAC CGACAGCGCG GCGCAGGCGT GGATCGACTG CTTCGGTTCG
ATGACGCGTC CGGTCGACGC GATCGAGACG CCGGAGGTGC AGTCGCTGGT GTTCCGCGGG
ATGGGCCAGC TCGCCTACAC GGCGACCGCG CTGCTGCGGC TTCCCGCCGA CAAAGCGGCT
AGCAAAACAT GGCTGCGCGC GATCATGCCG GAGCCGGGGC TGCTGCCGGA TTCATCCGGC
GCTGCGCCGC GGCCGGCGGT CGGCGCGGTC ACGTTCGGCG ATCGTCCGTT CGCCGGCGGC
GATGCGCCGC ATCATGTCGC GACCTTCGTC GCTTTCTCGG CGTCAGGGCT TGCGAGGCTC
GGGATGTCGC GGTCCAACGC CAATGACGGG CTGACGACGT TTCCGACCGC GTTCAACATC
GGTATGGCAA ATCGCGCCAA CATCCTGCGC GACACCGGCG CTTCTGCGCC GGAGCGGTGG
GACTGGGTCG ACGCCGCGCT CGACGGCCGC GACGACGTCG CCGCCGCTGA CGCCGCGTTG
TTCGTCTATG GCCGCTCGGC GGAGGACTGC CGCGCTGCGC TCGACAATCA CGCCGCGCTG
CTCGGCGGCT CCGACGCGCT GCTCTACGTG GTCGAGACCC GACCCGCCAC GGTCGAAACC
GAGGACGGGC CGAAGACCTC GCTCGACTAC GAACATTTCG GTTTCGTCGA TGGCATCTCG
CAGCCGGTGA TCCGCGGCAC CCAGCGCTTC GCCAAGGGCG TGGCTGCGCG CGACATCGTC
GAGCCGGGCG AATTCATCCT CGGCTATCGC AACAACCAGG GCTACTTTCC GCCGAGCGCG
ACGGTGCGGA GCAGCTCGGA TCCCGCCGAT CATCTGCCGA TCCTGCCCGA CGCGCTGCCG
GGTCGCTTCC CGAAGTTCTG CTCGGACACG CCGGCGAAAC CGGTGCGCGA TTTCGGCCGC
AACGGCACCT TCCTGGCGAT CCGCCACTTC GTGCAGGATG TCGACGGCTT CCGCAGCTTC
ACCGAGGCGA AGGCCGCCGA GCTCGGCAGA TATCGCGATC TCGCCGCGGT GATCGGCGAG
GAACCGACCG CCGAATGGGT CGCGGCGAAG ATGATGGGCC GCTGGCGCAA CGGCGTGCCG
CTGGTCGATC AGCCGAATTC GAAGACGTTC AACAATCGCC GCGGCCCGTC GCGCGACGAC
GTCGACCGCG CCTATGATCG CGACAACGAT TTCAGCTACG GCCAGGATGA TCCGCAGGGG
CTGCACTGTC CGTTCGGCGC GCATATCCGC CGCGCCAATC CGCGCGACAG CCTGCAGCCC
GATGATCCGA CGCAGCAGCG ATTGACCGCG CGTCACCGGC TGCTGCGCCG CGGCCGCTCG
TTCGAAAGCC AGCAAGGCGA TGCAGGCAGA CCGGAAAAGG GCCTGCTGTT CGTCGCGGTC
TGCGCCGACG TCGAGCGTCA GTTCGAGCTG GTGCAGCAAT CCTGGGTGTC GTCGCCGTCG
TTCCACGGCC TCAGCGACGA GCCGGACCCG ATCATTTCGG CGACGCCGGA CGATCCGGCC
GAGCAGCGGG TGTTCACCAT CCCGACCGCC GCCGGCCCGC TGACGCTGCA CGGCATCCAG
AGCTACGTCA CGGTGAAAGG CGGCGGCTAC TTCTTCATGC CGAGCCGCTC GGCGCTGCAA
TATTTGATCG ATCTGGAGTG A
|
|---|
| Protein sequence | MFTLKYYDAI KKAQSDAASA PPPPLVPFDL DDLGADTTLK RWSTTAFSYV LRGALYLFRE
FWPNPQFGRL VIVTRETDVR EVLAQPGVFE VPYGPEMTEL AGGTNFVLGL EGPEHDRQNA
IIRSVLRPTD LDRIKSLARH YAQILIDGSG GRIDVMKDLM TRVATETCCG YFGLAPEDPD
AFAEWAMSIS ALLFADPFGN AATRRLALNG AAQVREVIDR AIARAKAAPE TDTVVGRLVA
QSSDGAATEG EIRAILVGLV TGFIPTNTLA AGKILEELLR RPKVWAEAID CAGRDDSAGL
EAILLEAGRL NPALAPGQWR YATKDGVIAH NTSRQRKVRA GSVLMVATMS ALRDKRAFVS
AGSFRADRPN QSSLMFGDGV HACLGMHVAI AQITEVFRVL LRQPNLRRAS DRSGAIGWVG
PFPRRLDMEF EPKIAPQTQN MIVICAPVRP DTDLDALRAQ ITALGNPARP DVVAALQATG
LIHFASMTLI DAGTPDQPAP HLLLELNVDG SPESAIRAVV NEAGEWLAPI FAHADERAGA
ALGDILRRNM LDLQTKPWGA IGLNFNGTPE FAVADIVRQR ELARFTQDAL EAYLENHAGL
GSRAMVALGY VRKLIRQDPA LKRIIDQSPD STRKARLQAL FTRGAAFTDY LIRPSRRRLQ
ISDWVPRSGA ESLLAMFNST TFRWIGAIVI GLVLIASQAI YFAIEPYSDA TYIGRIALAV
VGGLLLVALK LAALAGLFLL VLRYYENGDV PDDSDPDIAR VREIAASENH PGFVQNHITA
VTALKPGAFR KLTLALSLWG IKELVTNFYR PGFVLNMGTI HKAKWFRPPG ADKLIFLANY
DGSWESYLED FVMKAHAGQS AAWSNGVGFP RTRFLIYDGA QDGDRFKRWV RRQQVPTQFW
FNRYPRLTTD EIRRNALIHD GLVRASTDSA AQAWIDCFGS MTRPVDAIET PEVQSLVFRG
MGQLAYTATA LLRLPADKAA SKTWLRAIMP EPGLLPDSSG AAPRPAVGAV TFGDRPFAGG
DAPHHVATFV AFSASGLARL GMSRSNANDG LTTFPTAFNI GMANRANILR DTGASAPERW
DWVDAALDGR DDVAAADAAL FVYGRSAEDC RAALDNHAAL LGGSDALLYV VETRPATVET
EDGPKTSLDY EHFGFVDGIS QPVIRGTQRF AKGVAARDIV EPGEFILGYR NNQGYFPPSA
TVRSSSDPAD HLPILPDALP GRFPKFCSDT PAKPVRDFGR NGTFLAIRHF VQDVDGFRSF
TEAKAAELGR YRDLAAVIGE EPTAEWVAAK MMGRWRNGVP LVDQPNSKTF NNRRGPSRDD
VDRAYDRDND FSYGQDDPQG LHCPFGAHIR RANPRDSLQP DDPTQQRLTA RHRLLRRGRS
FESQQGDAGR PEKGLLFVAV CADVERQFEL VQQSWVSSPS FHGLSDEPDP IISATPDDPA
EQRVFTIPTA AGPLTLHGIQ SYVTVKGGGY FFMPSRSALQ YLIDLE
|
|---|
| |