| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0793 |
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| Symbol | |
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| ID | 4021267 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | - |
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| Start bp | 889466 |
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| End bp | 891358 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637960983 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_567932 |
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| Protein GI | 91975273 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.758441 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGCT TCGCCGAACT GCTCGACCGT CTGGCCTACG AGCCCGGCCG CAACAACAAG
CTGCGGCTGA TCACCAATTA CTTCCGCGCC ACCGAAGACC CCGATCGCGG CTATGCGCTC
GCGGCGCTGA CCGGCGCGCT GTCGTTCCGC CACGCCAAGC CCGGCCTGAT CCGCGAACTG
ATCGCCGCCC GTACCGATCC GGTGCTGTTC GGCCTTTCAT ATGATTACGT CGGCGATCTG
TCGGAGACGG TGGCGCTGAT GTGGCCGACG CCGCGCAATA CGGCCGTCTC CACTCCCGCT
GGCGGAGCCT CTTCCCCTCC CCCCGGCTCG GCCTCCTCCC CTCCCCCTTG CGGGGAGGGG
TCGGGGGTGG GGGGCCACAG CGGGACGCCA TCCTCGTGGC ACCCTCACCC CAACCCTCTC
CCGCAAGCGG GAGAGGGAGC GCGCAGTGCT TGGGGCGAGG ACCGTGATTC AGAACTAAGC
GCCGCAACGA GCCCCGGCCA CAACAATCCA CCGCCCCCGT CGCTCACCGA GATCGTCACC
ACGCTGCACA GCCTCGGCAA GGCCGAGCTG CCGGCGCAGC TCACGCGCTG GCTCGACGAG
CTGGATGAAA CCGGCCGCTG GGCGCTGCTG AAGCTCGTCA CCGGCGGCCT GCGGATCGGC
GTCTCGGCGC GGCTGGCGAA GACCGCAGCG GCCGCGCTCG GCGACAAGGA CCCGCACGAC
GTCGAGCTGA TGTGGCCCGG ACTCGATGCA CCCTATCTCG ATCTGTTCGC CTGGCTGGAA
GGCCGCGGGC CCCAACCGGT CAATCGCGAT CCGGCGCCGT TTCGCCCGGT GATGCTGGCG
CATGCGCTCG AGGACACCGA CTTCGCCGCG ATGAATGCCG CCGACTACAT CGCCGAATGG
AAATGGGACG GCATCCGCGT GCAGGCGGTG AGCGGCGTTG GTGATGATGG CGACACCATC
GTACGGCTGT ATTCGCGCAG CGGCGAGGAC ATCACGAGGA GCTTCCCCGA CTTGCTGCCG
TCGCTGCGAT TACCGGGCGC GATCGACGGC GAGTTGCTGG TGTTGCGCGA GAGCCGGGTG
CAGTCGTTCA ACGTGCTGCA GCAGCGGCTC AACCGCAAAT CGGTGACGCC GAAGCTGATC
AAGGAGTATC CGATCCATCT GCGCGCCTAC GACCTGCTCG GCGAGGGCGA CGACGATCTG
CGTACGTTGA CGTTTGCCGA ACGCCGCGCA CGGCTGGAGG CGTTCGTCGC ACGGCTCGAC
GAACCCAAGA TCGACCTGTC TCCGATGGTG ACATTCGCCG ACTGGGATGA TTTGCACGCG
GCGCGGCGCG ATCCCGCCAG CGCCGGAGCC GGCCTCGATG CCGACGCGGT CGAGGGCGTG
ATGCTGAAGC GGCGCGATGC GCCGTATCTG CCCGGCCGCC CGAAAGGCCA ATGGTGGAAG
TGGAAACACG ATCCCCACAT CATCGACGCG GTGCTGATGT ATGCCCAGCG CGGCCATGGC
AAGCGCTCGT CTTATTATTC GGACTACACC TTCGGGGTCT GGACCGCAGG CGACGGCGGC
GATCAGCTCG TCCCGGTCGG CAAGGCGTAT TTCGGCTTTA CCGACGAGGA ATTGCTGCAG
ATCGACCGCT TCGTCCGCCG CAACACCACC GAAAAATTCG GCCCGGTCCG CCATGTCGTG
CACGAACCCG ATCAGGGCCT TGTGCTGGAA GTCGCTTTCG AGGGGCTGCA GCGCTCGCCG
CGGCACAAAT CCGGCGTGGC GATGCGTTTT CCGCGGATCA GCCGGCTGCG CTGGGACAAG
CCGCCGCGCG ACGCCGACCG GCTGGAGACG CTGGAGCGGA TGTTGAAGGC CGACGGCGCG
ATTCCATCCG CGGCGCCCGC CCGCGGCCAT TGA
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| Protein sequence | MNRFAELLDR LAYEPGRNNK LRLITNYFRA TEDPDRGYAL AALTGALSFR HAKPGLIREL
IAARTDPVLF GLSYDYVGDL SETVALMWPT PRNTAVSTPA GGASSPPPGS ASSPPPCGEG
SGVGGHSGTP SSWHPHPNPL PQAGEGARSA WGEDRDSELS AATSPGHNNP PPPSLTEIVT
TLHSLGKAEL PAQLTRWLDE LDETGRWALL KLVTGGLRIG VSARLAKTAA AALGDKDPHD
VELMWPGLDA PYLDLFAWLE GRGPQPVNRD PAPFRPVMLA HALEDTDFAA MNAADYIAEW
KWDGIRVQAV SGVGDDGDTI VRLYSRSGED ITRSFPDLLP SLRLPGAIDG ELLVLRESRV
QSFNVLQQRL NRKSVTPKLI KEYPIHLRAY DLLGEGDDDL RTLTFAERRA RLEAFVARLD
EPKIDLSPMV TFADWDDLHA ARRDPASAGA GLDADAVEGV MLKRRDAPYL PGRPKGQWWK
WKHDPHIIDA VLMYAQRGHG KRSSYYSDYT FGVWTAGDGG DQLVPVGKAY FGFTDEELLQ
IDRFVRRNTT EKFGPVRHVV HEPDQGLVLE VAFEGLQRSP RHKSGVAMRF PRISRLRWDK
PPRDADRLET LERMLKADGA IPSAAPARGH
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