| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0554 |
|---|
| Symbol | |
|---|
| ID | 4021022 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 625901 |
|---|
| End bp | 628108 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637960741 |
|---|
| Product | primosome assembly protein PriA |
|---|
| Protein accession | YP_567693 |
|---|
| Protein GI | 91975034 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1198] Primosomal protein N' (replication factor Y) - superfamily II helicase |
|---|
| TIGRFAM ID | [TIGR00595] primosomal protein N' |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.940906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.348137 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGACT CCCGAACCAG CCCGACCTCG AACGCCTCCA CCCGCGTGGT CGACGTGCAG
GTGCCGGTCG CGGTCGATCA GGCCTATTCG TACCGGGTGC CGCGCGGGCT CGATCTGAAG
CCCGGCGATG TCGTCGCGGT GCCGCTCGGG CCGCGCGAGG TGCTCGGCGT GGTCTGGGCC
GAAAACCCCA ATCCCGATCC GCGGCTGCAC AACCGTCTGA AAGACGTCGC CGAGAAGCTC
GACGTGCCGC CGTTGCGCGA GGAGCTACGC CGGCTGGTCG ATTGGGTCGC CAATTACACG
CTGTCGCCGC GCGGTCAGGT GCTGCGGATG ACGCTGCGGA TGGGCGAACT CGGTCCCGAA
CGTCAGCGCA TGGGCGTGCG GCTGGTCGGC CCGCCGCCGC AGCGGATGAC GCCGGCGCGG
CGGCGGCTGA TCGAGATTCT GTCGGACGGC CTGCTGCACG GCAAATCCGA CGTCGCCAAG
GAAGCCGGCG TCAGCCCCGG CGTGATCGAC GGTCTCGTCG ATGAGGGCAC GCTGCACGTC
GAAGCGATGC CGCGCGAGCC GGCGGCGCCG ACGCCCGATC CGGATTTCGC GCCGGCGGAT
TTCTCGCCCG AGCAGGCGCG GGCCGCCGAG ACGATGCGCG AACTGGTCAA ACCGGGCGGC
GGCTTTCAGG CGGCGCTGCT CGACGGCGTC ACCGGCTCGG GCAAGACGGA AGTTTATTTC
GAGGCGGTCG CCGAAGTCGT TCGCCAGGGC CGGCAGTGCC TGATCCTGAT GCCGGAGATC
GCGCTGACCG GACAATTTCT CGACCGCTTC GCGCTGCGCT TCGGCGTCCG GCCGCTGGAA
TGGCATTCGG AGCTGACGCC GCGCACCCGC GCCCGAAACT GGGCGGCGAT CGCGGCCGGC
GAGGCCCAGG TGGTGGTCGG CGCGCGCTCG GCGCTGTTCC TGCCCTATGC CGATCTCGGT
CTGATCATCG TCGATGAGGA GCACGACCAA GCCTACAAGC AGGAAGACGG CGCGCACTAC
CACGCCCGCG ACATGGCGGT GGTGCGCGCG TCGATCGCCA GGATCCCGAT CGTGCTGGCG
TCGGCGACGC CGTCGGTCGA GACCGAGGTC AACGCCCGCA AGGGCCGCTA CCGCCGGATT
CCGCTGCCGT CGCGATTCGG CGGCCAGCAC ATGCCGCAGA TCGAGGCGAT CGATCTACGC
CGCGAGCCGC CGATGCGCGG GCGGTTCATC TCGCCGCGTC TGGCCGAGCA GGTCGGCCAT
GCGATCGAGC GCCGCGAACA GGCGCTGTTG TTTCTCAACC GCCGCGGCTA TGCGCCGCTG
ACGCTGTGCC GGGCCTGCGG CCATCGCTTC GCCTGCACCA TCTGCGATGC CTGGCTGGTC
GATCATCGTT TCCGGCAGCG GCTGGTGTGC CACCATTGCG GCTTCTCGAT GCCGCGCCCG
CTCCAATGCC CGCATTGCGC CGCCGAGCAA TCGCTGGTGG CGGTCGGCCC CGGCGTCGAG
CGGCTGCAGG AGGAGGCTTC GAGCCTGTTT CCGGATGCGC GGACGATGGT GCTGTCGAGC
GATCTGATCA CCTCGATCGA GGCCATGCGC AGCGAGCTGA ACGACATCGC CGAAGGCCGG
GTCGACATCA TCATCGGCAC CCAATTGGTG GCGAAGGGCC ATAATTTTCC GCGGCTCAAT
CTGGTCGGCG TGGTCGACGC CGATCTCGGC CTCAGCAACG GCGATCCGCG CGCCGCCGAG
CGCACCTTCC AGCTTTTGAA TCAGGTGATC GGCCGCGCAG GGCGCGATCA GGGCCGCGGC
GTCGGCTTTC TGCAGACCCA TCAGCCGGAG CATCCGGTGA TGAAGGCGCT GGTCGCGTGC
GATCGCGAGG CCTTCTACGC CAGCGAAATC GAGGCGCGCG AACGGACGCT GTACCCGCCG
TTCGGCCGAC TCGCGAGCCT GATCATTTCC GCCGGCGACC GGCCGACCGC GGAAGGCTTT
GCGCGGCAGC TGGCGTCGAG CGCGCCGGTC GACGAGCGCG TGCAGGTGCT GGGGCCGGCC
GAAGCGCCGC TCGCAGTGAT CAAGGGCCGC TATCGATTCA GGCTGCTGGT GAAGTCGGTG
CGGTCATTCG ATCTGTCGAA CTACTTGCGG CAATGGTTGG CGCAGGGTCC GAAGACCAAA
GGAAACCTGA AGCTCGAGGT CGACGTCGAT CCGCAAAGCT TCCTGTAG
|
|---|
| Protein sequence | MDDSRTSPTS NASTRVVDVQ VPVAVDQAYS YRVPRGLDLK PGDVVAVPLG PREVLGVVWA
ENPNPDPRLH NRLKDVAEKL DVPPLREELR RLVDWVANYT LSPRGQVLRM TLRMGELGPE
RQRMGVRLVG PPPQRMTPAR RRLIEILSDG LLHGKSDVAK EAGVSPGVID GLVDEGTLHV
EAMPREPAAP TPDPDFAPAD FSPEQARAAE TMRELVKPGG GFQAALLDGV TGSGKTEVYF
EAVAEVVRQG RQCLILMPEI ALTGQFLDRF ALRFGVRPLE WHSELTPRTR ARNWAAIAAG
EAQVVVGARS ALFLPYADLG LIIVDEEHDQ AYKQEDGAHY HARDMAVVRA SIARIPIVLA
SATPSVETEV NARKGRYRRI PLPSRFGGQH MPQIEAIDLR REPPMRGRFI SPRLAEQVGH
AIERREQALL FLNRRGYAPL TLCRACGHRF ACTICDAWLV DHRFRQRLVC HHCGFSMPRP
LQCPHCAAEQ SLVAVGPGVE RLQEEASSLF PDARTMVLSS DLITSIEAMR SELNDIAEGR
VDIIIGTQLV AKGHNFPRLN LVGVVDADLG LSNGDPRAAE RTFQLLNQVI GRAGRDQGRG
VGFLQTHQPE HPVMKALVAC DREAFYASEI EARERTLYPP FGRLASLIIS AGDRPTAEGF
ARQLASSAPV DERVQVLGPA EAPLAVIKGR YRFRLLVKSV RSFDLSNYLR QWLAQGPKTK
GNLKLEVDVD PQSFL
|
|---|
| |