Gene RPD_0496 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0496 
Symbol 
ID4020964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp570335 
End bp571213 
Gene Length879 bp 
Protein Length292 aa 
Translation table11 
GC content68% 
IMG OID637960683 
ProductCitryl-CoA lyase 
Protein accessionYP_567635 
Protein GI91974976 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2301] Citrate lyase beta subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGAC CGCGCCGCAG CCTGTTGTTC ATGCCGGGGT CGAACGCGCG GGCGCTGGAG 
AAGGCCCGGC TGCTGCCCGT CGACGGGCTG ATTCTCGACC TCGAGGACTC GGTGGCGCCG
GAGGCCAAGG CGCAGGCGCG CGATCAGATC GGGCAGGCCG TCGCGGCCAA GGGTTACGGC
CGCCGCGAGG TGCTGGTGCG GATCAACGCG CTGGATTCGC CGTGGTGGCT CGACGACATC
GCGATGGCCG CCAAGGTCAA GCCGGACGGC ATTCTGGTGC CCAAGGTGTC GAGCGTGCAG
GACCTCTCGG CGATCGCCGA TCGGCTCAGC GATCTCAACG CCGACATGTC GATCCGGGTC
TGGATCATGA TCGAGACATC GCGCGGCGTG CTTCACGCCG AGGAGCTGGC GGCGCAGGTC
CACGATTCCG AGACGCGGTT GGCCGGCTTC GTGTTCGGTC CGAACGACAT TTCGCGCGAA
ACAGGCATCC GAATGCTGCC CGGCCGCACC GCGATGATCC CGATGATCAC GCACTGCATC
CTCGCCGCGC GCGTGCACGG CCTGACCGTG CTCGACGGTC CCTACAGCGA CATCGCCAGT
GTCGACGGCT TCGCCCTGGA ATGCGCCCAG GCGCGTGATC TCGGCTTCGA CGGCAAGACG
CTGATTCATC CCGGGCAGAT CGAGGCCTGC AACGCAGCCT TCACCCCGCC GCCCGAGGAC
GTGGCTCAGG CGCGCAAGAT CATCGCCGCG TTCGAGCGCC CGGAAAACGC CGGTCGCGGC
GCGATCCAGC TCGACGGCCG GATGGTCGAG CGGCTGCACG CCGAGATCGC GAAGAAGACC
ATCGCGATCG CCGATGCGGT CGAAACGATG GGGCGTTGA
 
Protein sequence
MIRPRRSLLF MPGSNARALE KARLLPVDGL ILDLEDSVAP EAKAQARDQI GQAVAAKGYG 
RREVLVRINA LDSPWWLDDI AMAAKVKPDG ILVPKVSSVQ DLSAIADRLS DLNADMSIRV
WIMIETSRGV LHAEELAAQV HDSETRLAGF VFGPNDISRE TGIRMLPGRT AMIPMITHCI
LAARVHGLTV LDGPYSDIAS VDGFALECAQ ARDLGFDGKT LIHPGQIEAC NAAFTPPPED
VAQARKIIAA FERPENAGRG AIQLDGRMVE RLHAEIAKKT IAIADAVETM GR