| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0490 |
|---|
| Symbol | |
|---|
| ID | 4020958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 564693 |
|---|
| End bp | 565805 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637960677 |
|---|
| Product | 3-isopropylmalate dehydrogenase |
|---|
| Protein accession | YP_567629 |
|---|
| Protein GI | 91974970 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0473] Isocitrate/isopropylmalate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00169] 3-isopropylmalate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.473858 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACGC ATAAACTGCT GCTTCTCCCC GGCGACGGCA TCGGCACCGA AGTGATGGCC
GAGGTGAGCC GGTTGATCGA CTGGCTCAAC AAGGCCGGCA TCGCCAGCTT CGAGACCGAG
CACGGCCTGG TGGGCGGCGC CGCCTATGAC GCCGACAAGG TCGCGATCAC CGACGCCACC
ATGGCGAAGG CGCAGGCCTG CGACGCGGTG ATCTTCGGCG CCGTCGGCGG GCCGAAATGG
GACGCGGTGC CGTATGACGC GCGGCCCGAG GCCGGCCTGC TGCGGCTGCG CAAGGATCTG
GCGCTGTTCG CCAATCTGCG TCCCGCGGTG TGCTACCCGG CGCTCGCCTC CGCCTCCAGC
CTGAAGCCCG AGGTGGTCGA AGGCCTCGAC ATCATGATCG TGCGCGAGCT CACCGGCGGC
GTGTATTTCG GCGAGCCGAA GACCATCACC GATCTCGGAG GCGGCCAGAA GCGCGCGATC
GACACCCAGG TTTACGACAC CTACGAAATC GAGCGGATCG GCCGCGTCGC CTTCGACCTG
GCCCGCAAGC GCCGCAACAA GGTCACCTCG ATGGAGAAGC GCAACGTCAT GAAGACGGGC
GTGCTCTGGA ACGAGGTGAT CACCCAGGTG CATCAGCGCG AATACAAGGA CGTTCAGCTC
GAGCACCAGC TCGCCGATTC CGGCGGCATG AATCTGGTGA AGTGGCCGAA GCAGTTCGAC
GTCATCGTCA CCGACAATCT GTTCGGCGAC ATGCTGTCCG ACATCGCCGC GATGCTGACC
GGCTCGCTCG GCATGTTGCC GTCGGCCTCG CTCGGCGAAG TCGACAGCAA GACCGGCAAG
CGCAAGGCGA TGTACGAGCC GGTGCACGGC TCGGCCCCGG ATATCGCCGG CAAGGGCATG
GCCAATCCGG TGGCGATGCT CGCCTCGTTC GGGATGGCGC TGCGCTACTC GCTGGACATG
GGCGATCTCG CCGACAAGCT CGATGAAGCC ATCGCCGCCG TGCTGGCCAA GGGCCTGCGC
ACTGCCGACA TCAAGTCGGA CGGCTCGACC GTGGTCTCGA CCAGCCAGAT GGGCGAAGCC
ATCGTGCAGG AGCTGCAGGC GCTGCACGGG TAA
|
|---|
| Protein sequence | MATHKLLLLP GDGIGTEVMA EVSRLIDWLN KAGIASFETE HGLVGGAAYD ADKVAITDAT
MAKAQACDAV IFGAVGGPKW DAVPYDARPE AGLLRLRKDL ALFANLRPAV CYPALASASS
LKPEVVEGLD IMIVRELTGG VYFGEPKTIT DLGGGQKRAI DTQVYDTYEI ERIGRVAFDL
ARKRRNKVTS MEKRNVMKTG VLWNEVITQV HQREYKDVQL EHQLADSGGM NLVKWPKQFD
VIVTDNLFGD MLSDIAAMLT GSLGMLPSAS LGEVDSKTGK RKAMYEPVHG SAPDIAGKGM
ANPVAMLASF GMALRYSLDM GDLADKLDEA IAAVLAKGLR TADIKSDGST VVSTSQMGEA
IVQELQALHG
|
|---|
| |