| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_0359 |
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| Symbol | |
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| ID | 4020825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB5 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007958 |
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| Strand | + |
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| Start bp | 424666 |
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| End bp | 425946 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637960544 |
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| Product | pseudouridine synthase RluD |
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| Protein accession | YP_567498 |
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| Protein GI | 91974839 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000104546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGTCGCCG GCGGTGGCGG TGGCGACGAC GCGCGCCCCC TTCGGCAGCC GCAGCGTGGT
CTCGGCGGCG ACCGGAACGC TTCCCTCGGA GCGGAAAAGC TTATAGCCGA TGGCGATGAG
AACCGCCGCG AGCGCCAGCG CCGTGGTCAG GCCCGCGATC ATCATCATCC GCCGCACCCG
CGCAAACAGC GCGGCCTGTT CGGGGGTCGG TTCGGGCAGG GCGGTTTCGG TCATGCAATG
CTCGGTTTTG GCTCGGTTTT TTTGGAAGGC TCGATCGTGA ACGATTCGTC GGGACATCTG
CTGGAAGTGG TCGTTGCCGG CGACGAGGGG TCGCCGCGGC TCGACCGGGT ACTGGCGACG
CGGTGCCCGG CTCTGTCGCG GTCGCGGCTG AAGGCCCTGA TCCTCGACGG TCGCGTCGCG
ATTCGCGGCG CCCCGGTCCG CGACCCCGCT TATCACGCCG CCTCGGGGGA GACGATCACA
ATCGACGTGC CGCCGCCGGT GGCGCCGGAG CCGGCCGGCG AGGCGATCGC GCTCGAGATC
GTCCACGAGG ACGACGACAT CATCGTCATC GATAAGCCGC GCGGCCTCGT GGTGCATCCC
GCCGCCGGCC ACGAGACCGG CACCCTGGTC AACGCCTTGA TCGCGCATTG CGGCGAATCG
CTGTCCGGGA TCGGCGGGGT GCGGCGGCCG GGGATCGTCC ACCGGCTCGA CAAGGACACC
ACCGGGCTGA TGGTCGCGGC AAAGAATGAT CGAGCCCACC AATCCTTGAG CGCGCAATTC
GCCGACCATG GCCGCACCGG AGAGCTGCGC CGCGGCTATT ACGCCTTTGT CTGGGGGGCG
CCGAACCGCA TCCGCGGCAC CATCGACGCG CCGATCGACC GGCATCCCCA TGCCCGCGAA
AAGATGGCGG TGCGTGACGG CGGACGCGAG GCGATCACCC ATTGGGAGGT GCTGGAGACC
TTCACGGGCC GCAGCGGCGG CGAGATCGTG TCGCTGATCG CCTGCCAGCT CGAGACCGGC
CGCACCCACC AGATCCGGGT GCATCTCGCC CATATCGGCC ACCCGCTGCT CGGCGACGAC
GTCTATGGCC CGCATTTCAA AACCAAGGCC AGCCAGCTCC GCCCGGACGC CCGCGCCGCG
CTGACGGATC TGGGCCGGCA GGCGCTGCAT GCCTATCTGC TGGTGCTCGA GCACCCCTCC
ACCGGGGAAG TCGTCGCGTG GGAATCCGGC CTGCCGGCCG ATCTGAAGCG CCTGAAAGCC
GCCCTGACGG CGACGGAATG A
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| Protein sequence | MVAGGGGGDD ARPLRQPQRG LGGDRNASLG AEKLIADGDE NRRERQRRGQ ARDHHHPPHP
RKQRGLFGGR FGQGGFGHAM LGFGSVFLEG SIVNDSSGHL LEVVVAGDEG SPRLDRVLAT
RCPALSRSRL KALILDGRVA IRGAPVRDPA YHAASGETIT IDVPPPVAPE PAGEAIALEI
VHEDDDIIVI DKPRGLVVHP AAGHETGTLV NALIAHCGES LSGIGGVRRP GIVHRLDKDT
TGLMVAAKND RAHQSLSAQF ADHGRTGELR RGYYAFVWGA PNRIRGTIDA PIDRHPHARE
KMAVRDGGRE AITHWEVLET FTGRSGGEIV SLIACQLETG RTHQIRVHLA HIGHPLLGDD
VYGPHFKTKA SQLRPDARAA LTDLGRQALH AYLLVLEHPS TGEVVAWESG LPADLKRLKA
ALTATE
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